View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_363 (Length: 251)

Name: NF11453A_low_363
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_363
NF11453A_low_363
[»] scaffold1652 (3 HSPs)
scaffold1652 (1-251)||(46-296)
scaffold1652 (127-250)||(253-373)
scaffold1652 (132-203)||(336-407)
[»] scaffold0902 (3 HSPs)
scaffold0902 (2-201)||(3563-3762)
scaffold0902 (139-203)||(3468-3532)
scaffold0902 (213-249)||(3596-3632)
[»] scaffold0002 (2 HSPs)
scaffold0002 (1-250)||(165079-165313)
scaffold0002 (127-203)||(165271-165347)
[»] chr6 (5 HSPs)
chr6 (1-250)||(14248413-14248647)
chr6 (57-250)||(14316975-14317165)
chr6 (113-203)||(14351646-14351736)
chr6 (127-203)||(14248379-14248455)
chr6 (132-202)||(14316942-14317012)
[»] scaffold1176 (3 HSPs)
scaffold1176 (127-203)||(112-188)
scaffold1176 (125-250)||(32-154)
scaffold1176 (4-59)||(1265-1320)
[»] chr4 (4 HSPs)
chr4 (125-203)||(37245116-37245194)
chr4 (31-88)||(37237814-37237871)
chr4 (132-191)||(37241922-37241981)
chr4 (17-76)||(37245288-37245347)


Alignment Details
Target: scaffold1652 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 46 - 296
Alignment:
Q  1 catcatcccctaagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtctcctccggtagctgtgaatagtgctccctc 100  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  46 catcatcacccaagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtctcctccggtaactgtgaatagtgctccctc 145  T
Q  101 ttcttcaccgactgcttcatctggttctcccgctgctgctcctgctgtcgccccatcgtcaatctctactcctccatctcaagcaccatcgcctacgatt 200  Q
    ||||| | ||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||| ||||||||||||||||    
T  146 ttctttaacgactgcttcatctggttctcccgctgctgctcctgctgtctctccatcgtcgatctctactcctccatctcaagtaccatcgcctacgatt 245  T
Q  201 tcttctgctcttgctgcttctcctgctgtcgctccatcgtcgatctctacc 251  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  246 tcttctcctcctgctgcttctcctgctgtcgctccatcgtcgatctctacc 296  T

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Target: scaffold1652; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 127 - 250
Target Start/End: Original strand, 253 - 373
Alignment:
Q  127 ctcccgctgctgctcctgctgtcgccccatcgtcaatctctactcctccatctcaagcaccatcgcctacgatttcttctgctcttgctgcttctcctgc 226  Q
    |||| |||||| ||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||   |||| ||||||||||  |||||||    
T  253 ctcctgctgcttctcctgctgtcgctccatcgtcgatctctacccctccatctcaagcaccatcgcctacgat---ttctcctcttgctgccgctcctgc 349  T
Q  227 tgtcgctccatcgtcgatctctac 250  Q
    |||  ||||||||||||| |||||    
T  350 tgtgactccatcgtcgatatctac 373  T

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Target: scaffold1652; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 336 - 407
Alignment:
Q  132 gctgctgctcctgctgtcgccccatcgtcaatctctactcctccatctcaagcaccatcgcctacgatttct 203  Q
    ||||| |||||||||||  | |||||||| || ||||||||||||||||||||||||| |||| ||||||||    
T  336 gctgccgctcctgctgtgactccatcgtcgatatctactcctccatctcaagcaccatagcctgcgatttct 407  T

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Target: scaffold0902 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 2 - 201
Target Start/End: Complemental strand, 3762 - 3563
Alignment:
Q  2 atcatcccctaagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtctcctccggtagctgtgaatagtgctccctct 101  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  3762 atcatcccccaagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtctcctccggtacctctgaatagtgctccctct 3663  T
Q  102 tcttcaccgactgcttcatctggttctcccgctgctgctcctgctgtcgccccatcgtcaatctctactcctccatctcaagcaccatcgcctacgattt 201  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||  |||||| ||||||||||||||||||| ||||    
T  3662 tcttcaccaactgcttcatctggttctcccgctgctgctcctgctgtcactccatcgtcgatctctatccctccaactcaagcaccatcgcctacaattt 3563  T

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Target: scaffold0902; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 3532 - 3468
Alignment:
Q  139 ctcctgctgtcgccccatcgtcaatctctactcctccatctcaagcaccatcgcctacgatttct 203  Q
    ||||||||||  | |||||||| ||||||||||||||||||||||||||| ||||| ||||||||    
T  3532 ctcctgctgtgactccatcgtcgatctctactcctccatctcaagcaccaacgcctgcgatttct 3468  T

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Target: scaffold0902; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 3632 - 3596
Alignment:
Q  213 gctgcttctcctgctgtcgctccatcgtcgatctcta 249  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  3632 gctgctgctcctgctgtcactccatcgtcgatctcta 3596  T

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Target: scaffold0002 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 165079 - 165313
Alignment:
Q  1 catcatcccctaagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtctcctccggtagctgtgaatagtgctccctc 100  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||    
T  165079 catcatccccccagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtcttctccggtacctctgaatagtgctccctc 165178  T
Q  101 ttcttcaccgactgcttcatctggttctcccgctgctgctcctgctgtcgccccatcgtcaatctctactcctccatctcaagcaccatcgcctacgatt 200  Q
    | |||||||| ||||||  |||||||            ||||||||||||| ||||| |  |||||||| ||||||||||||| |||||||||||| ||     
T  165179 tccttcaccgtctgctttctctggtt------------ctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactat- 165265  T
Q  201 tcttctgctcttgctgcttctcctgctgtcgctccatcgtcgatctctac 250  Q
      |||| ||| ||||||| ||||||||||  |||||| ||||||||||||    
T  165266 --ttctcctcctgctgctgctcctgctgtgactccatggtcgatctctac 165313  T

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Target: scaffold0002; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 165271 - 165347
Alignment:
Q  127 ctcccgctgctgctcctgctgtcgccccatcgtcaatctctactcctccatctcaagcaccatcgcctacgatttct 203  Q
    |||| |||||||||||||||||  | |||| ||| |||||||||||||||||||||| |||||||||| ||||||||    
T  165271 ctcctgctgctgctcctgctgtgactccatggtcgatctctactcctccatctcaaggaccatcgcctgcgatttct 165347  T

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Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 14248647 - 14248413
Alignment:
Q  1 catcatcccctaagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtctcctccggtagctgtgaatagtgctccctc 100  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||    
T  14248647 catcatccccccagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtcttctccggtacctctgaatagtgctccctc 14248548  T
Q  101 ttcttcaccgactgcttcatctggttctcccgctgctgctcctgctgtcgccccatcgtcaatctctactcctccatctcaagcaccatcgcctacgatt 200  Q
    | |||||||| ||||||  |||||||            ||||||||||||| ||||| |  |||||||| ||||||||||||| |||||||||||| ||     
T  14248547 tccttcaccgtctgctttctctggtt------------ctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactat- 14248461  T
Q  201 tcttctgctcttgctgcttctcctgctgtcgctccatcgtcgatctctac 250  Q
      |||| ||| ||||||| ||||||||||  |||||| ||||||||||||    
T  14248460 --ttctcctcctgctgctgctcctgctgtgactccatggtcgatctctac 14248413  T

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Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 57 - 250
Target Start/End: Complemental strand, 14317165 - 14316975
Alignment:
Q  57 tcaccagtggcgtctcctccggtagctgtgaatagtgctccctcttcttcaccgactgcttcatctggttctcccgctgctgctcctgctgtcgccccat 156  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||||||| ||||||| ||||||||||| ||||| ||||||| |||||| ||||    
T  14317165 tcaccagtggcgtctcctccggtacctctgaatagtgctccctctccttcaccgtctgcttcctctggttctcctgctgcagctcctgttgtcgctccat 14317066  T
Q  157 cgtcaatctctactcctccatctcaagcaccatcgcctacgatttcttctgctcttgctgcttctcctgctgtcgctccatcgtcgatctctac 250  Q
    | |  |||||||| || |||||||||| |||||||||||| |||||| || |   ||||||| |||||| |||  ||||||| |||||||||||    
T  14317065 catggatctctaccccaccatctcaaggaccatcgcctactatttctccttc---tgctgctgctcctgatgtgactccatcatcgatctctac 14316975  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 113 - 203
Target Start/End: Complemental strand, 14351736 - 14351646
Alignment:
Q  113 tgcttcatctggttctcccgctgctgctcctgctgtcgccccatcgtcaatctctactcctccatctcaagcaccatcgcctacgatttct 203  Q
    |||||| | ||||||||||||||  |||||||||||  | ||||| ||| |||||||||| ||||||||||||||||||||||||||||||    
T  14351736 tgcttcctttggttctcccgctgtcgctcctgctgttactccatcatcagtctctactccaccatctcaagcaccatcgcctacgatttct 14351646  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 14248455 - 14248379
Alignment:
Q  127 ctcccgctgctgctcctgctgtcgccccatcgtcaatctctactcctccatctcaagcaccatcgcctacgatttct 203  Q
    |||| |||||||||||||||||  | |||| ||| |||||||||||||||||||||| |||||||||| ||||||||    
T  14248455 ctcctgctgctgctcctgctgtgactccatggtcgatctctactcctccatctcaaggaccatcgcctgcgatttct 14248379  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 14317012 - 14316942
Alignment:
Q  132 gctgctgctcctgctgtcgccccatcgtcaatctctactcctccatctcaagcaccatcgcctacgatttc 202  Q
    ||||||||||||| |||  | ||||| || |||||||||||||| ||||||||||| |||||| |||||||    
T  14317012 gctgctgctcctgatgtgactccatcatcgatctctactcctccgtctcaagcaccctcgcctgcgatttc 14316942  T

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Target: scaffold1176 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 112 - 188
Alignment:
Q  127 ctcccgctgctgctcctgctgtcgccccatcgtcaatctctactcctccatctcaagcaccatcgcctacgatttct 203  Q
    |||| |||||||||||||||||  | ||||| || ||||||||||||||||||||||||||||||||| ||||||||    
T  112 ctcctgctgctgctcctgctgtgactccatcatcgatctctactcctccatctcaagcaccatcgcctgcgatttct 188  T

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Target: scaffold1176; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 250
Target Start/End: Original strand, 32 - 154
Alignment:
Q  125 ttctcccgctgctgctcctgctgtcgccccatcgtcaatctctactcctccatctcaagcaccatcgcctacgatttcttctgctcttgctgcttctcct 224  Q
    |||||||  ||| ||||||| |||||  ||||| |  |||||||| ||||||||||||| |||||||||||| ||   |||| ||| ||||||| |||||    
T  32 ttctcccagtgccgctcctgttgtcgatccatcctggatctctacccctccatctcaaggaccatcgcctactat---ttctcctcctgctgctgctcct 128  T
Q  225 gctgtcgctccatcgtcgatctctac 250  Q
    |||||  ||||||| |||||||||||    
T  129 gctgtgactccatcatcgatctctac 154  T

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Target: scaffold1176; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 1265 - 1320
Alignment:
Q  4 catcccctaagtcttctccgtttccatcacctgctatttctccctccgctgactca 59  Q
    ||||||| |||||||||||||||||||| ||||| ||||||||||| ||| |||||    
T  1265 catcccccaagtcttctccgtttccatctcctgcgatttctccctcagctaactca 1320  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 37245194 - 37245116
Alignment:
Q  125 ttctcccgctgctgctcctgctgtcgccccatcgtcaatctctactcctccatctcaagcaccatcgcctacgatttct 203  Q
    |||||||| ||| |||||||||||  | |||||||| ||||||||||||||||||||||||||||| ||  ||||||||    
T  37245194 ttctcccgttgccgctcctgctgtgactccatcgtcgatctctactcctccatctcaagcaccatcaccagcgatttct 37245116  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 37237871 - 37237814
Alignment:
Q  31 cacctgctatttctccctccgctgactcaccagtggcgtctcctccggtagctgtgaa 88  Q
    ||||||| || |||||||||||||||||||| ||||| |||||||| ||| |||||||    
T  37237871 cacctgcgatctctccctccgctgactcaccggtggcatctcctcccgtacctgtgaa 37237814  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 37241981 - 37241922
Alignment:
Q  132 gctgctgctcctgctgtcgccccatcgtcaatctctactcctccatctcaagcaccatcg 191  Q
    ||||| ||||||||| |  | |||||||||||||||||||||||| || |||||||||||    
T  37241981 gctgccgctcctgctattactccatcgtcaatctctactcctccaactaaagcaccatcg 37241922  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 37245347 - 37245288
Alignment:
Q  17 ttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtctcctcc 76  Q
    ||||||||||||||||||    ||||||||||||||| ||||||||||||| ||| ||||    
T  37245347 ttctccgtttccatcaccaataatttctccctccgctaactcaccagtggcatctgctcc 37245288  T

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