View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_37 (Length: 443)
Name: NF11453A_low_37
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 7 - 251
Target Start/End: Complemental strand, 53565343 - 53565099
Alignment:
| Q |
7 |
agaatgagttaaattcaaagttcaaattgctactaaatgttggtccattcaacttgacaacaccacagcgtaaggtttccgatgaacatggatgcttgga |
106 |
Q |
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| T |
53565343 |
agaatgagttaaattcaaagttcaaattgctactaaatgttggtccattcaacttgacaacaccacagcgtaaggtttccgatgaacatggatgcttaga |
53565244 |
T |
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| Q |
107 |
atggttggaccaacatgagaattcttcagtagtgtatataagctttggaagtgtggtaacacccccacctcatgagctcactgcattggcagagtcctta |
206 |
Q |
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| T |
53565243 |
atggttggaccaacatgagaattcttcagtagtgtatataagctttggaagtgtggtaacacccccacctcatgagctcactgcattggcagagtcctta |
53565144 |
T |
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| Q |
207 |
gaggaatgcggatttccatttatttggtcctttaggggtggtcct |
251 |
Q |
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| T |
53565143 |
gaggaatgtggatttccatttatttggtcctttaggggtgatcct |
53565099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 304 - 440
Target Start/End: Complemental strand, 53565046 - 53564910
Alignment:
| Q |
304 |
tcgttgcatgggctcctcgagttgaaatccttaaacattcatcggttggtgtgtttttgacgcattctgggtggaattctgtgttggaatgtattgttgg |
403 |
Q |
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| T |
53565046 |
tcgttgcatgggctcctcaagttgaaatccttaaacattcatcggttggtgtgtttttgacgcattctgggtggaattctgtgttggaatgcattgttgg |
53564947 |
T |
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| Q |
404 |
tggtgtgccaatgattagtagacatattgttggagat |
440 |
Q |
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| T |
53564946 |
tggtgtgccaatgattagtagacctttttttggagat |
53564910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 7 - 233
Target Start/End: Complemental strand, 53580133 - 53579907
Alignment:
| Q |
7 |
agaatgagttaaattcaaagttcaaattgctactaaatgttggtccattcaacttgacaacaccacagcgtaaggtttccgatgaacatggatgcttgga |
106 |
Q |
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| T |
53580133 |
agaatgagttaaattcccagttcaaattgctactaaatgttggtccattcatcttgacaacaccgcaacgtatggtttctgatgaacatggatgtttagc |
53580034 |
T |
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| Q |
107 |
atggttggaccaacatgagaattcttcagtagtgtatataagctttggaagtgtggtaacacccccacctcatgagctcactgcattggcagagtcctta |
206 |
Q |
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| T |
53580033 |
atggttgaaccaatgtgagaaattctcagttgtgtatattagcttcggaagtcggatagtaccaccacctcatgagctcaatgcattggctgagtgttta |
53579934 |
T |
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| Q |
207 |
gaggaatgcggatttccatttatttgg |
233 |
Q |
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| T |
53579933 |
gaagaatgtggatgtccatttatttgg |
53579907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 306 - 426
Target Start/End: Complemental strand, 53579834 - 53579714
Alignment:
| Q |
306 |
gttgcatgggctcctcgagttgaaatccttaaacattcatcggttggtgtgtttttgacgcattctgggtggaattctgtgttggaatgtattgttggtg |
405 |
Q |
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|||||||||||||||| | | |||||||||||||| ||| | |||||| ||| |||||| |||||||| ||||| || |||||||| || |||||||||| |
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| T |
53579834 |
gttgcatgggctcctcaaatggaaatccttaaacactcagctgttggtatgtgtttgacacattctggttggaactcagtgttggattgcattgttggtg |
53579735 |
T |
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| Q |
406 |
gtgtgccaatgattagtagac |
426 |
Q |
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|||| |||||| ||||||||| |
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| T |
53579734 |
gtgtaccaatggttagtagac |
53579714 |
T |
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