View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_378 (Length: 250)
Name: NF11453A_low_378
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_378 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 23 - 213
Target Start/End: Complemental strand, 38359492 - 38359303
Alignment:
| Q |
23 |
caggaatcaatccagaagttaatattttccccatttcgaatatttcaagacacattttctagcacagtagagtatttatgcctagcaccaatcaaaacag |
122 |
Q |
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| T |
38359492 |
caggaatcaatccagaagttaatattttccccatttccaatatttcaagacacattttctagcacagtagagtatttatgcctagcaccactcaaaacag |
38359393 |
T |
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| Q |
123 |
atgaagaaacatgataatcgactggnnnnnnngttccttaggatcctgcttctaatgaattgatcccattgtaaatctgattgcatgatat |
213 |
Q |
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|||| ||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38359392 |
atgacgaaacatgataattgactgg-ttttttgttccttaggatcctgcttctaatgaactgatcccattgtaaatctgattgcatgatat |
38359303 |
T |
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