View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453A_low_38 (Length: 441)
Name: NF11453A_low_38
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_38 |
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| [»] scaffold0902 (2 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold1652 (1 HSPs) |
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| [»] scaffold1176 (1 HSPs) |
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Alignment Details
Target: scaffold0902 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 124 - 439
Target Start/End: Complemental strand, 3899 - 3596
Alignment:
| Q |
124 |
aacaatatcactgcttcaaaactttcta--gttaaccctaattttcccattctccttcatctttcaactatggcttcttctcatatcacaccgctgtgtt |
221 |
Q |
| |
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||||||||||||||| ||||||||| || ||||||||||||||||| ||||||||||||||||| |||||||||||||| || | ||||||||||| |
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| T |
3899 |
aacaatatcactgctacaaaactttatatagttaaccctaattttcctattctccttcatctttctactatggcttcttc-caaa----accgctgtgtt |
3805 |
T |
|
| Q |
222 |
gatgcttttggttgcactgtttctgagttccgctgttgctcgatcaccgccatcatcccctaagtcttctccgtttccatcacctgctatttctccctcc |
321 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3804 |
gatgcttttggttgcactgttgctgagttccgccgttgctagatca---------tcccccaagtcttctccgtttccatcacctgctatttctccctcc |
3714 |
T |
|
| Q |
322 |
gctgactcaccagtggcgtctcctccggtagctgtgaatagtgctccctcttcttcaccgactgcttcatctggttctcccgctgctgctcctgctgtcg |
421 |
Q |
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|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3713 |
gctgactcaccagtggcgtctcctccggtacctctgaatagtgctccctcttcttcaccaactgcttcatctggttctcccgctgctgctcctgctgtca |
3614 |
T |
|
| Q |
422 |
ccccatcgtcaatctcta |
439 |
Q |
| |
|
| |||||||| ||||||| |
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|
| T |
3613 |
ctccatcgtcgatctcta |
3596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 83 - 17
Alignment:
| Q |
118 |
caacacaacaatatcactgcttcaaaactttcta--gttaaccctaattttcccattctccttcatc |
182 |
Q |
| |
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|||||||| ||||||| |||||||||||||| || |||||||||||| |||||||||||| ||||| |
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|
| T |
83 |
caacacaataatatcattgcttcaaaactttatattgttaaccctaatattcccattctccatcatc |
17 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 180; Significance: 5e-97; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 139 - 406
Target Start/End: Original strand, 164951 - 165213
Alignment:
| Q |
139 |
tcaaaactttctagttaaccctaattttcccattctccttcatctttcaactatggcttcttctcatatcacaccgctgtgttgatgcttttggttgcac |
238 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||| | | ||||||||||||||||| ||||||| |
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| T |
164951 |
tcaaaactttctagttaaccctaatattcccattctcgttcatctttctactatggcttcttctca-----ctcggctgtgttgatgcttttcgttgcac |
165045 |
T |
|
| Q |
239 |
tgtttctgagttccgctgttgctcgatcaccgccatcatcccctaagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggc |
338 |
Q |
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|
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
165046 |
tgtttctgagttccgctgttgctcgatcaccaccatcatccccccagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggc |
165145 |
T |
|
| Q |
339 |
gtctcctccggtagctgtgaatagtgctccctcttcttcaccgactgcttcatctggttctcccgctg |
406 |
Q |
| |
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|||| |||||||| || ||||||||||||||||| |||||||| |||||| ||||||||||| |||| |
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| T |
165146 |
gtcttctccggtacctctgaatagtgctccctctccttcaccgtctgctttctctggttctcctgctg |
165213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 180; Significance: 5e-97; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 139 - 406
Target Start/End: Complemental strand, 14248775 - 14248513
Alignment:
| Q |
139 |
tcaaaactttctagttaaccctaattttcccattctccttcatctttcaactatggcttcttctcatatcacaccgctgtgttgatgcttttggttgcac |
238 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||| | | ||||||||||||||||| ||||||| |
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| T |
14248775 |
tcaaaactttctagttaaccctaatattcccattctcgttcatctttctactatggcttcttctca-----ctcggctgtgttgatgcttttcgttgcac |
14248681 |
T |
|
| Q |
239 |
tgtttctgagttccgctgttgctcgatcaccgccatcatcccctaagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggc |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14248680 |
tgtttctgagttccgctgttgctcgatcaccaccatcatccccccagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggc |
14248581 |
T |
|
| Q |
339 |
gtctcctccggtagctgtgaatagtgctccctcttcttcaccgactgcttcatctggttctcccgctg |
406 |
Q |
| |
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|||| |||||||| || ||||||||||||||||| |||||||| |||||| ||||||||||| |||| |
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| T |
14248580 |
gtcttctccggtacctctgaatagtgctccctctccttcaccgtctgctttctctggttctcctgctg |
14248513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 214 - 305
Target Start/End: Complemental strand, 14317252 - 14317161
Alignment:
| Q |
214 |
gctgtgttgatgcttttggttgcactgtttctgagttccgctgttgctcgatcaccgccatcatcccctaagtcttctccgtttccatcacc |
305 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| |
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| T |
14317252 |
gctgtgttgatgcttttggttgcactgtttctgagttccgctgttgctcgatcaccaccatcatcacccaagtcttctccgtttccatcacc |
14317161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 328 - 428
Target Start/End: Complemental strand, 14317165 - 14317065
Alignment:
| Q |
328 |
tcaccagtggcgtctcctccggtagctgtgaatagtgctccctcttcttcaccgactgcttcatctggttctcccgctgctgctcctgctgtcgccccat |
427 |
Q |
| |
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|||||||||||||||||||||||| || ||||||||||||||||| |||||||| ||||||| ||||||||||| ||||| ||||||| |||||| |||| |
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| T |
14317165 |
tcaccagtggcgtctcctccggtacctctgaatagtgctccctctccttcaccgtctgcttcctctggttctcctgctgcagctcctgttgtcgctccat |
14317066 |
T |
|
| Q |
428 |
c |
428 |
Q |
| |
|
| |
|
|
| T |
14317065 |
c |
14317065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: scaffold1652
Description:
Target: scaffold1652; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 227 - 441
Target Start/End: Original strand, 1 - 215
Alignment:
| Q |
227 |
ttttggttgcactgtttctgagttccgctgttgctcgatcaccgccatcatcccctaagtcttctccgtttccatcacctgctatttctccctccgctga |
326 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1 |
ttttggttgcactgtttctgagttccgccgttgctagatcaccaccatcatcacccaagtcttctccgtttccatcacctgctatttctccctccgctga |
100 |
T |
|
| Q |
327 |
ctcaccagtggcgtctcctccggtagctgtgaatagtgctccctcttcttcaccgactgcttcatctggttctcccgctgctgctcctgctgtcgcccca |
426 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| | ||| |
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|
| T |
101 |
ctcaccagtggcgtctcctccggtaactgtgaatagtgctccctcttctttaacgactgcttcatctggttctcccgctgctgctcctgctgtctctcca |
200 |
T |
|
| Q |
427 |
tcgtcaatctctact |
441 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
201 |
tcgtcgatctctact |
215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold1176
Description:
Target: scaffold1176; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 216 - 330
Target Start/End: Original strand, 1206 - 1320
Alignment:
| Q |
216 |
tgtgttgatgcttttggttgcactgtttctgagttccgctgttgctcgatcaccgccatcatcccctaagtcttctccgtttccatcacctgctatttct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| | | |||||| |||||| || ||||||| |||||||||||||||||||| ||||| |||||| |
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|
| T |
1206 |
tgtgttgatgcttttggttgcactgtttctaagtttcaccgttgcttaatcaccatcaacatcccccaagtcttctccgtttccatctcctgcgatttct |
1305 |
T |
|
| Q |
316 |
ccctccgctgactca |
330 |
Q |
| |
|
||||| ||| ||||| |
|
|
| T |
1306 |
ccctcagctaactca |
1320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 155 - 347
Target Start/End: Complemental strand, 37245478 - 37245288
Alignment:
| Q |
155 |
aaccctaattttcccattctccttc---atctttcaactatggcttcttctcatatcacaccgctgtgttgatgcttttggttgcactgtttctgagttc |
251 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||| ||||||||||| | |||||| |||| |||||||||||||||||||| | ||| ||| |
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|
| T |
37245478 |
aaccctaatattcccattctccttcttcatctttctactatggcttcct--------acaccgttgtgctgatgcttttggttgcactgctgctggattc |
37245387 |
T |
|
| Q |
252 |
cgctgttgctcgatcaccgccatcatcc---cctaagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtctcctcc |
347 |
Q |
| |
|
| | |||||||||||||| |||||||| || | || |||||||||||||||||| ||||||||||||||| ||||||||||||| ||| |||| |
|
|
| T |
37245386 |
cacagttgctcgatcaccaccatcatcatcgcccatgttttctccgtttccatcaccaataatttctccctccgctaactcaccagtggcatctgctcc |
37245288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 359
Target Start/End: Complemental strand, 37237871 - 37237814
Alignment:
| Q |
302 |
cacctgctatttctccctccgctgactcaccagtggcgtctcctccggtagctgtgaa |
359 |
Q |
| |
|
||||||| || |||||||||||||||||||| ||||| |||||||| ||| ||||||| |
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|
| T |
37237871 |
cacctgcgatctctccctccgctgactcaccggtggcatctcctcccgtacctgtgaa |
37237814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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