View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_385 (Length: 249)
Name: NF11453A_low_385
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_385 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 13960144 - 13959903
Alignment:
| Q |
1 |
gcgttatgattttggcaggataaggaatcattatgtcgcaatccaggttaacatcgaccacatttacttaaaattctatgaaaaaccaccttaatattga |
100 |
Q |
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| T |
13960144 |
gcgttatgattttggcagcataaagaatcattatgtcgcaatccagattaacatcgcccacatttatttaaaattctacgaaaaaccaccttaatattga |
13960045 |
T |
|
| Q |
101 |
cgttgactattgaaagtaaaagtt--tagtttttcttgtaacgtctaagactacgacttgatcggtgtaagtttgacataaacnnnnnnnctgatatttg |
198 |
Q |
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| T |
13960044 |
cgttgactattgaaagtaaaagtttatagtttttcttgtaacgtctaagactatgacttgatcggtgtaagtttgacataaacaaaaaaactgatatttg |
13959945 |
T |
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| Q |
199 |
tggctcaaaatcgatcaactcaattgtttatcctatattctt |
240 |
Q |
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| T |
13959944 |
tggctcaaaatcgatcaactcaattgtttatcctatattctt |
13959903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 2 - 181
Target Start/End: Complemental strand, 13971602 - 13971421
Alignment:
| Q |
2 |
cgttatgattttggcaggataaggaatcattatgtcgcaatccaggttaacatcgaccacatttacttaaaattctatgaaaaaccaccttaatattgac |
101 |
Q |
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||||||||||||| || |||| ||||||||||||||||||| | | | ||| ||| ||||| |||||||||||||| | || |||||||||||||| |
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| T |
13971602 |
cgttatgattttgacaacataaagaatcattatgtcgcaatcttgataattgtcgcccaaatttatttaaaattctatgacagacaaccttaatattgac |
13971503 |
T |
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| Q |
102 |
gttgactattgaaagtaaaagttta--gtttttcttgtaacgtctaagactacgacttgatcggtgtaagtttgacataaac |
181 |
Q |
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| T |
13971502 |
attgactattgaaagtaaaagtttatagtttttcttgtaacgtctaagattatgacttgattggtgtaagtttgacataaac |
13971421 |
T |
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