View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_386 (Length: 249)
Name: NF11453A_low_386
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_386 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 24639590 - 24639829
Alignment:
| Q |
1 |
ggtagacaagaatttcagacagaggattcttactcatttatcttcacagtaagtcat-tgttattccttcactaaacttaagagttttattattttgaca |
99 |
Q |
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| T |
24639590 |
ggtagacaagaatttcagacagaggattcttactcatttatctttacagtaagtcatatgttattccttcactaaacttaagagttttattattttgaca |
24639689 |
T |
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| Q |
100 |
tgcaaatttgacaacgatttagatggttaatgaagtttaaactgatgacaatgtgttgtaaataattaactatcactgaacttaataacttctaaaagcc |
199 |
Q |
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| T |
24639690 |
tgcaaatttgacaacgatttagatggttaatgaagtttaaactgatgtcaatgtgttgtaaataattaactatcactgaacttaataacttctaaaagcc |
24639789 |
T |
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| Q |
200 |
acaaattgtgctcattggtttggttgatttgagctttcat |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
24639790 |
acaaattgtgctcattggtttggttgatttgagctttcat |
24639829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 52491176 - 52490937
Alignment:
| Q |
1 |
ggtagacaagaatttcagacagaggattcttactcatttatcttcacagtaagtcat-tgttattccttcactaaacttaagagttttattattttgaca |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
52491176 |
ggtagacaagaatttcagacagaggattcttactcatttatctttacagtaagtcatatgttattccttcactaaacttaagagttttattattttgaca |
52491077 |
T |
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| Q |
100 |
tgcaaatttgacaacgatttagatggttaatgaagtttaaactgatgacaatgtgttgtaaataattaactatcactgaacttaataacttctaaaagcc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52491076 |
tgcaaatttgacaacgatttagatggttaatgaagtttaaactgatgtcaatgtgttgtaaataattaactatcactgaacttaataacttctaaaagcc |
52490977 |
T |
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| Q |
200 |
acaaattgtgctcattggtttggttgatttgagctttcat |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
52490976 |
acaaattgtgctcattggtttggttgatttgagctttcat |
52490937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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