View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_387 (Length: 249)

Name: NF11453A_low_387
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_387
NF11453A_low_387
[»] chr4 (40 HSPs)
chr4 (26-231)||(2891814-2892019)
chr4 (72-136)||(3340861-3340925)
chr4 (76-136)||(50630797-50630857)
chr4 (76-136)||(54017637-54017697)
chr4 (82-136)||(3271841-3271895)
chr4 (82-144)||(31249906-31249968)
chr4 (91-136)||(22028018-22028063)
chr4 (91-136)||(49880214-49880259)
chr4 (76-133)||(54936253-54936310)
chr4 (76-144)||(18932791-18932859)
chr4 (76-136)||(25483390-25483450)
chr4 (76-136)||(36629291-36629351)
chr4 (92-136)||(39404452-39404496)
chr4 (76-136)||(55933166-55933226)
chr4 (82-136)||(1731695-1731749)
chr4 (82-144)||(2741117-2741179)
chr4 (82-136)||(4955365-4955419)
chr4 (82-136)||(31691206-31691260)
chr4 (82-132)||(49302964-49303014)
chr4 (91-144)||(16889593-16889646)
chr4 (91-136)||(41370411-41370456)
chr4 (76-136)||(10245974-10246033)
chr4 (76-136)||(18879860-18879920)
chr4 (93-137)||(22183323-22183367)
chr4 (76-136)||(36572073-36572133)
chr4 (82-144)||(44620706-44620767)
chr4 (76-144)||(50002472-50002540)
chr4 (92-136)||(52884941-52884985)
chr4 (76-136)||(54108967-54109026)
chr4 (88-127)||(29802604-29802643)
chr4 (92-135)||(45484774-45484817)
chr4 (72-131)||(49076869-49076928)
chr4 (78-136)||(44620407-44620465)
chr4 (76-144)||(15841410-15841478)
chr4 (76-144)||(16888858-16888926)
chr4 (76-136)||(23817723-23817783)
chr4 (76-136)||(34646691-34646751)
chr4 (76-136)||(40067098-40067158)
chr4 (91-139)||(41603248-41603296)
chr4 (76-136)||(45496859-45496919)
[»] chr8 (36 HSPs)
chr8 (72-144)||(8918804-8918876)
chr8 (82-144)||(3038340-3038402)
chr8 (76-136)||(70318-70378)
chr8 (76-136)||(3670114-3670174)
chr8 (76-136)||(9483231-9483291)
chr8 (76-136)||(30441139-30441199)
chr8 (88-144)||(40991799-40991855)
chr8 (81-136)||(40518636-40518691)
chr8 (77-136)||(43274824-43274883)
chr8 (82-136)||(147505-147559)
chr8 (82-144)||(9507828-9507890)
chr8 (82-136)||(40518125-40518179)
chr8 (91-136)||(8794165-8794210)
chr8 (76-136)||(3669741-3669801)
chr8 (92-136)||(9309033-9309077)
chr8 (76-136)||(20870617-20870677)
chr8 (76-136)||(30359325-30359385)
chr8 (76-136)||(33113411-33113471)
chr8 (76-136)||(40579550-40579610)
chr8 (80-136)||(45121704-45121760)
chr8 (76-119)||(2441197-2441240)
chr8 (84-127)||(30737670-30737713)
chr8 (77-136)||(34835263-34835322)
chr8 (77-136)||(34835529-34835588)
chr8 (77-136)||(34835795-34835854)
chr8 (76-122)||(147888-147934)
chr8 (82-136)||(1513965-1514019)
chr8 (77-139)||(5974596-5974658)
chr8 (82-144)||(45121960-45122022)
chr8 (95-136)||(5420705-5420746)
chr8 (76-129)||(5915928-5915981)
chr8 (91-132)||(11442911-11442952)
chr8 (91-136)||(45122678-45122723)
chr8 (92-136)||(25561876-25561920)
chr8 (76-136)||(34834930-34834990)
chr8 (72-136)||(37544530-37544594)
[»] chr5 (30 HSPs)
chr5 (76-136)||(25327989-25328049)
chr5 (76-139)||(32445936-32445999)
chr5 (76-136)||(26074666-26074726)
chr5 (76-136)||(27502080-27502140)
chr5 (72-136)||(41170688-41170752)
chr5 (82-136)||(13415810-13415864)
chr5 (82-136)||(18603170-18603224)
chr5 (81-135)||(32487448-32487502)
chr5 (91-136)||(26075221-26075266)
chr5 (76-136)||(9498698-9498758)
chr5 (76-136)||(40296359-40296419)
chr5 (76-136)||(41632836-41632896)
chr5 (76-132)||(42405640-42405696)
chr5 (93-136)||(3295405-3295448)
chr5 (82-144)||(1028567-1028629)
chr5 (82-136)||(34753075-34753129)
chr5 (76-136)||(6500504-6500564)
chr5 (80-136)||(11417025-11417081)
chr5 (76-136)||(15370153-15370213)
chr5 (91-135)||(26074841-26074885)
chr5 (94-136)||(15370456-15370498)
chr5 (76-130)||(26074190-26074244)
chr5 (76-142)||(33747819-33747885)
chr5 (79-112)||(2828132-2828165)
chr5 (91-136)||(3295074-3295119)
chr5 (82-127)||(36521946-36521991)
chr5 (76-136)||(624250-624310)
chr5 (101-137)||(9510589-9510625)
chr5 (76-144)||(13786045-13786113)
chr5 (76-136)||(35150061-35150120)
[»] chr2 (34 HSPs)
chr2 (91-136)||(38796679-38796724)
chr2 (76-136)||(5542669-5542729)
chr2 (76-136)||(36178649-36178709)
chr2 (69-128)||(6421793-6421852)
chr2 (82-136)||(14745717-14745771)
chr2 (82-136)||(15880317-15880371)
chr2 (82-136)||(36005930-36005984)
chr2 (76-136)||(6713030-6713091)
chr2 (91-136)||(33731702-33731747)
chr2 (76-136)||(5543042-5543102)
chr2 (76-136)||(28254281-28254341)
chr2 (82-136)||(37106242-37106296)
chr2 (77-138)||(25390313-25390374)
chr2 (88-144)||(2336670-2336726)
chr2 (76-136)||(15511539-15511599)
chr2 (76-136)||(40733571-40733631)
chr2 (77-136)||(962652-962711)
chr2 (88-139)||(2323667-2323717)
chr2 (69-128)||(6421688-6421747)
chr2 (82-133)||(14745344-14745395)
chr2 (80-139)||(33561499-33561558)
chr2 (77-123)||(2803211-2803257)
chr2 (82-144)||(30312835-30312897)
chr2 (82-136)||(31259666-31259720)
chr2 (79-129)||(31468797-31468847)
chr2 (82-136)||(41283525-41283579)
chr2 (82-136)||(42514703-42514757)
chr2 (76-136)||(40163416-40163477)
chr2 (94-139)||(41678430-41678474)
chr2 (76-136)||(6421439-6421499)
chr2 (76-136)||(6422164-6422224)
chr2 (92-136)||(31385791-31385835)
chr2 (76-136)||(37105978-37106038)
chr2 (104-136)||(38796290-38796322)
[»] scaffold0702 (1 HSPs)
scaffold0702 (72-136)||(554-618)
[»] chr7 (36 HSPs)
chr7 (76-136)||(23421-23481)
chr7 (76-136)||(45434690-45434750)
chr7 (82-144)||(1085666-1085728)
chr7 (76-136)||(7517634-7517694)
chr7 (82-136)||(22566712-22566766)
chr7 (82-136)||(36534834-36534888)
chr7 (82-136)||(36939783-36939837)
chr7 (95-144)||(16569242-16569291)
chr7 (95-144)||(16596371-16596420)
chr7 (76-136)||(6054614-6054674)
chr7 (76-136)||(30244324-30244384)
chr7 (76-136)||(37533055-37533114)
chr7 (76-136)||(37533408-37533468)
chr7 (76-138)||(33773288-33773350)
chr7 (76-136)||(7554079-7554139)
chr7 (76-136)||(11845245-11845305)
chr7 (76-136)||(19122785-19122845)
chr7 (76-136)||(22567083-22567143)
chr7 (76-136)||(29157619-29157679)
chr7 (76-136)||(30245131-30245191)
chr7 (76-136)||(30253546-30253606)
chr7 (76-136)||(40230335-40230395)
chr7 (72-136)||(41854688-41854752)
chr7 (76-136)||(45433295-45433355)
chr7 (89-141)||(45679490-45679542)
chr7 (81-136)||(30032621-30032676)
chr7 (82-136)||(40094824-40094878)
chr7 (76-133)||(14681567-14681624)
chr7 (76-121)||(23569046-23569091)
chr7 (91-136)||(47129149-47129194)
chr7 (82-134)||(1085298-1085350)
chr7 (82-146)||(24177479-24177543)
chr7 (102-146)||(28301613-28301657)
chr7 (76-136)||(34218078-34218138)
chr7 (76-136)||(43241549-43241609)
chr7 (76-136)||(45754769-45754829)
[»] chr6 (26 HSPs)
chr6 (72-136)||(2377808-2377872)
chr6 (76-136)||(10074035-10074095)
chr6 (76-144)||(2578487-2578555)
chr6 (82-136)||(16454961-16455015)
chr6 (76-136)||(3409313-3409373)
chr6 (76-136)||(10074407-10074467)
chr6 (76-136)||(16107732-16107792)
chr6 (76-136)||(26544103-26544163)
chr6 (76-136)||(29518557-29518617)
chr6 (76-136)||(29518974-29519034)
chr6 (72-136)||(32460620-32460684)
chr6 (76-136)||(32741233-32741293)
chr6 (76-135)||(3415513-3415572)
chr6 (82-136)||(593759-593813)
chr6 (82-136)||(35210258-35210312)
chr6 (76-141)||(2579536-2579601)
chr6 (91-136)||(2579931-2579976)
chr6 (76-132)||(1950229-1950285)
chr6 (76-136)||(3058280-3058340)
chr6 (93-136)||(16454629-16454672)
chr6 (82-136)||(1127414-1127468)
chr6 (95-136)||(2378180-2378221)
chr6 (99-136)||(16108117-16108154)
chr6 (76-136)||(1846802-1846862)
chr6 (76-144)||(2578879-2578947)
chr6 (76-136)||(3409714-3409774)
[»] chr3 (38 HSPs)
chr3 (76-136)||(54018242-54018302)
chr3 (82-137)||(25991456-25991511)
chr3 (91-144)||(41359824-41359877)
chr3 (76-136)||(8327958-8328018)
chr3 (76-144)||(22304615-22304683)
chr3 (76-136)||(32589757-32589817)
chr3 (76-136)||(35946576-35946636)
chr3 (76-136)||(54017860-54017920)
chr3 (82-135)||(47964568-47964621)
chr3 (91-139)||(3384325-3384373)
chr3 (76-136)||(12114606-12114666)
chr3 (76-144)||(25991073-25991141)
chr3 (82-132)||(22303709-22303759)
chr3 (82-136)||(29644952-29645006)
chr3 (91-136)||(1634373-1634418)
chr3 (91-144)||(33362352-33362405)
chr3 (76-136)||(22303999-22304059)
chr3 (76-144)||(32462944-32463012)
chr3 (76-136)||(37990683-37990743)
chr3 (76-136)||(39914306-39914366)
chr3 (76-136)||(39934999-39935059)
chr3 (76-136)||(42342432-42342492)
chr3 (76-136)||(43346835-43346895)
chr3 (76-136)||(52634730-52634789)
chr3 (88-127)||(50329388-50329427)
chr3 (74-136)||(4823709-4823771)
chr3 (82-136)||(29644631-29644685)
chr3 (82-136)||(42342140-42342194)
chr3 (78-144)||(46546371-46546437)
chr3 (82-135)||(33803302-33803355)
chr3 (76-129)||(39389131-39389184)
chr3 (76-136)||(15772908-15772968)
chr3 (76-136)||(15773246-15773306)
chr3 (83-127)||(25317221-25317265)
chr3 (71-135)||(25739464-25739528)
chr3 (76-136)||(37991021-37991081)
chr3 (76-136)||(45395697-45395757)
chr3 (87-139)||(47508147-47508199)
[»] chr1 (35 HSPs)
chr1 (76-136)||(11977334-11977394)
chr1 (76-144)||(17294623-17294691)
chr1 (76-136)||(31767205-31767265)
chr1 (72-136)||(44290498-44290562)
chr1 (82-136)||(66137-66191)
chr1 (76-136)||(9955962-9956023)
chr1 (91-136)||(44290884-44290929)
chr1 (76-136)||(14318921-14318981)
chr1 (76-136)||(34364979-34365039)
chr1 (96-144)||(41184489-41184537)
chr1 (72-137)||(883615-883680)
chr1 (91-136)||(45839685-45839730)
chr1 (76-136)||(3550774-3550834)
chr1 (76-144)||(22077154-22077222)
chr1 (76-136)||(26661566-26661626)
chr1 (76-136)||(26661942-26662002)
chr1 (76-136)||(32594760-32594820)
chr1 (76-136)||(34364561-34364621)
chr1 (76-136)||(41157045-41157105)
chr1 (76-136)||(41157429-41157489)
chr1 (76-136)||(50052067-50052127)
chr1 (76-119)||(11977015-11977058)
chr1 (91-122)||(34649506-34649537)
chr1 (96-139)||(41184152-41184195)
chr1 (77-127)||(30208189-30208239)
chr1 (91-136)||(66531-66576)
chr1 (95-136)||(3875394-3875435)
chr1 (95-136)||(41142426-41142467)
chr1 (76-136)||(29798253-29798313)
chr1 (76-144)||(30576627-30576695)
chr1 (91-139)||(30630697-30630745)
chr1 (76-136)||(37556166-37556225)
chr1 (96-136)||(37850664-37850704)
chr1 (76-136)||(41759537-41759597)
chr1 (76-136)||(44043816-44043876)
[»] scaffold0391 (1 HSPs)
scaffold0391 (76-136)||(1735-1795)
[»] scaffold0078 (1 HSPs)
scaffold0078 (76-136)||(5411-5471)
[»] scaffold0734 (1 HSPs)
scaffold0734 (100-136)||(5831-5867)
[»] scaffold0027 (1 HSPs)
scaffold0027 (76-136)||(47414-47474)


Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 26 - 231
Target Start/End: Original strand, 2891814 - 2892019
Alignment:
Q  26 aagtttcacattgcatcacatcaggccacgaaaaattgtatacgttagaaagacatcacactttaacccaaaaccttaaggcattaggtttatgggtcct 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  2891814 aagtttcacattgcatcacatcaggccacgaaaaattgtatacgtgagaaagacatcacactttaacccaaaaccttaagacattaggtttatggatcct 2891913  T
Q  126 cttacttataaagtattcagcaatcgcttttacagtcgatgtggtatgctcttggctcaatatgaatgagtaccgaagaagaatgctcatctcttgcaac 225  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2891914 cttacttataaagtattcagcattcgcttttccagtcgatgtggtatgctcttggctcaatatgaatgagtaccgaagaagaatgctcacctcttgcaac 2892013  T
Q  226 catgat 231  Q
     |||||    
T  2892014 tatgat 2892019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 3340925 - 3340861
Alignment:
Q  72 agaaagacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||||||| |||||| | |||||||||||||||||| | |||||||||||||||||||||||||    
T  3340925 agaaagacaccacactcttacccaaaaccttaaggcagtgggtttatgggtcctcttacttataa 3340861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 50630797 - 50630857
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||| | |||||||||||||||||||||||||    
T  50630797 agacaccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataa 50630857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 54017637 - 54017697
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||||||| | ||| |||||||||||||| | |||||||||||||||||||||||||    
T  54017637 agacatcacactcttacctaaaaccttaaggcaatgggtttatgggtcctcttacttataa 54017697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 136
Target Start/End: Complemental strand, 3271895 - 3271841
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||| | |||||||||||||||||| ||||||||||||| |||||||||||||    
T  3271895 cacactcttacccaaaaccttaaggcaataggtttatgggttctcttacttataa 3271841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 31249906 - 31249968
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtattca 144  Q
    |||||||||||||||||| | | | ||||||||||||||||||||| ||||||||||| ||||    
T  31249906 cacactttaacccaaaacttgacgtcattaggtttatgggtcctctaacttataaagtgttca 31249968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 22028018 - 22028063
Alignment:
Q  91 acccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||||||||||||| || ||||||||||||||||||||||||    
T  22028018 acccaaaaccttaaggcaatatgtttatgggtcctcttacttataa 22028063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 49880259 - 49880214
Alignment:
Q  91 acccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||||||||||||| | |||||||||||||||||||||||||    
T  49880259 acccaaaaccttaaggcagtgggtttatgggtcctcttacttataa 49880214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 54936310 - 54936253
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttactta 133  Q
    ||||| |||||| | |||||||||||||||||| | ||||||||||||||||||||||    
T  54936310 agacaccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttactta 54936253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 18932791 - 18932859
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtattca 144  Q
    ||||| |||||| | ||| |||||||||||||| | |||||||||||||||||| |||||| |||||||    
T  18932791 agacaccacactcttacctaaaaccttaaggcaatgggtttatgggtcctcttatttataaggtattca 18932859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 25483450 - 25483390
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||| | ||||||||| |||||||||||||||    
T  25483450 agacaccacactcttacccaaaaccttaaggcaatgggtttatggatcctcttacttataa 25483390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 36629351 - 36629291
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||| |  ||||||||||||||||||||||||    
T  36629351 agacaccacactcttacccaaaaccttaaggcaatgagtttatgggtcctcttacttataa 36629291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 39404496 - 39404452
Alignment:
Q  92 cccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||||||||||||||  |||||||||||||||||||||||||||    
T  39404496 cccaaaaccttaaggctataggtttatgggtcctcttacttataa 39404452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 55933166 - 55933226
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | ||||||||| |||||||| | |||||||||||||||||||||||||    
T  55933166 agacaccacactcttacccaaaactttaaggcaatgggtttatgggtcctcttacttataa 55933226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 1731695 - 1731749
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||| | |||||||||||||||||| | |||||||||||||||||| ||||||    
T  1731695 cacactcttacccaaaaccttaaggcaattggtttatgggtcctcttatttataa 1731749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 2741179 - 2741117
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtattca 144  Q
    |||||| | |||||||||||||||||| | |  |||||||||||||||||||||| |||||||    
T  2741179 cacactcttacccaaaaccttaaggcaatggagttatgggtcctcttacttataaggtattca 2741117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 4955365 - 4955419
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||| | |||||||||||||||||| | |||||||| ||||||||||||||||    
T  4955365 cacactcttacccaaaaccttaaggcaatgggtttatgagtcctcttacttataa 4955419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 136
Target Start/End: Complemental strand, 31691260 - 31691206
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||| | |||||||||||||||||| |  ||||||||||||||||||||||||    
T  31691260 cacactcttacccaaaaccttaaggcaatgagtttatgggtcctcttacttataa 31691206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 49303014 - 49302964
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttactt 132  Q
    |||||| | |||||||||||||||||| | |||||||||||||||||||||    
T  49303014 cacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttactt 49302964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 16889593 - 16889646
Alignment:
Q  91 acccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtattca 144  Q
    ||||||||| |||||||| ||||||||||  ||||||||||||||| |||||||    
T  16889593 acccaaaactttaaggcagtaggtttatgaatcctcttacttataaggtattca 16889646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 41370456 - 41370411
Alignment:
Q  91 acccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||||||| |||||||| | |||||||||||||||||||||||||    
T  41370456 acccaaaactttaaggcaatgggtttatgggtcctcttacttataa 41370411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 10246033 - 10245974
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | ||||||||||||||||| || ||||||| |||||||||||||||||    
T  10246033 agacaccacactcttacccaaaaccttaaggctttgggtttat-ggtcctcttacttataa 10245974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 18879920 - 18879860
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||| ||||||| | |||||||||||||||| | ||||||||| |||| ||||||||||||    
T  18879920 agacgtcacactcttacccaaaaccttaaggaaataggtttataggtcatcttacttataa 18879860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 22183323 - 22183367
Alignment:
Q  93 ccaaaaccttaaggcattaggtttatgggtcctcttacttataaa 137  Q
    |||||||||||||||| | |||||||||||||| |||||||||||    
T  22183323 ccaaaaccttaaggcaatgggtttatgggtccttttacttataaa 22183367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 36572133 - 36572073
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| || ||| |||||||||||||||||||| | | |||||||||| ||||||||||||    
T  36572133 agacaccatactctaacccaaaaccttaaggcaatggatttatgggtcttcttacttataa 36572073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 44620767 - 44620706
Alignment:
Q  82 cacactttaacccaaaaccttaaggcatta-ggtttatgggtcctcttacttataaagtattca 144  Q
    |||||| | ||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||    
T  44620767 cacactcttacccaaaaccttaagg--ttatggtttatgggtcctcttacttataaagtgttca 44620706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 50002540 - 50002472
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtattca 144  Q
    ||||| |||||| | ||||||||||||||| || | | |||||||||||||||||||| ||||| ||||    
T  50002540 agacaccacactcttacccaaaaccttaagacaatggatttatgggtcctcttacttaaaaagtgttca 50002472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 52884985 - 52884941
Alignment:
Q  92 cccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||||||||||||||| | ||||||||| |||||||||||||||    
T  52884985 cccaaaaccttaaggcaatgggtttatggatcctcttacttataa 52884941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 54109026 - 54108967
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | ||||||||| |||||||| | |||||||||||||||||||||||||    
T  54109026 agacaccacactcttacccaaaac-ttaaggcaatgggtttatgggtcctcttacttataa 54108967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 127
Target Start/End: Complemental strand, 29802643 - 29802604
Alignment:
Q  88 ttaacccaaaaccttaaggcattaggtttatgggtcctct 127  Q
    ||||| ||||||||||||||||| ||||||||||||||||    
T  29802643 ttaacacaaaaccttaaggcattgggtttatgggtcctct 29802604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 135
Target Start/End: Complemental strand, 45484817 - 45484774
Alignment:
Q  92 cccaaaaccttaaggcattaggtttatgggtcctcttacttata 135  Q
    ||||||||||||||||||| ||||||||||| |||| |||||||    
T  45484817 cccaaaaccttaaggcattgggtttatgggttctctcacttata 45484774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 49076869 - 49076928
Alignment:
Q  72 agaaagacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttact 131  Q
    ||||||||| |||||| ||||||||||||||||||   | ||||||||||| ||||||||    
T  49076869 agaaagacaccacactctaacccaaaaccttaaggttatgggtttatgggttctcttact 49076928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 44620465 - 44620407
Alignment:
Q  78 acatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||||| | |||||||||||||||||| | ||||||||||  |||||| ||||||    
T  44620465 acatcacactcttacccaaaaccttaaggcaatgggtttatgggctctcttatttataa 44620407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 15841410 - 15841478
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtattca 144  Q
    |||||||||||| | |||||||||||||||||| |  |||||||  |||||| ||||| ||||| ||||    
T  15841410 agacatcacactcttacccaaaaccttaaggcaatgtgtttatgaatcctctcacttacaaagtgttca 15841478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 16888858 - 16888926
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtattca 144  Q
    |||||||||||| | |||||||||| |||| || |  |||||| ||| ||||||||||||| |||||||    
T  16888858 agacatcacactcttacccaaaaccgtaagacaatgagtttataggttctcttacttataaggtattca 16888926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 23817723 - 23817783
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||| |  |||||||  |||||||||||||||    
T  23817723 agacaccacactcttacccaaaaccttaaggcaatgagtttatgaatcctcttacttataa 23817783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 34646691 - 34646751
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||| |  ||||||| ||||||||| ||||||    
T  34646691 agacaccacactcttacccaaaaccttaaggcaatgagtttatgagtcctcttagttataa 34646751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 40067158 - 40067098
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||||||||| |||||||| ||||||| | | | | |||| ||||||||||||||||    
T  40067158 agacatcacacttttacccaaaatcttaaggtagtggatctatgtgtcctcttacttataa 40067098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 41603248 - 41603296
Alignment:
Q  91 acccaaaaccttaaggcattaggtttatgggtcctcttacttataaagt 139  Q
    ||||||||||||||| || || ||||||||||| ||| |||||||||||    
T  41603248 acccaaaaccttaagacactatgtttatgggtcttctcacttataaagt 41603296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 45496919 - 45496859
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | ||||||||||||||| || |  |||||| |||||||||||||||||    
T  45496919 agacaccacactcttacccaaaaccttaagacaatgagtttataggtcctcttacttataa 45496859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 8918804 - 8918876
Alignment:
Q  72 agaaagacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtattca 144  Q
    |||||||| ||||||| | ||||||||||||||| || |||||||||||||||||||||||||||||| ||||    
T  8918804 agaaagacgtcacactcttacccaaaaccttaagtcaataggtttatgggtcctcttacttataaagtgttca 8918876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 3038340 - 3038402
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtattca 144  Q
    |||||| | |||||||||||||||||| | |||||||||||||| ||||||||||||| ||||    
T  3038340 cacactcttacccaaaaccttaaggcaatgggtttatgggtccttttacttataaagtgttca 3038402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 70318 - 70378
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||| ||||||| | ||| |||||||||||||| | |||||||||||||||||||||||||    
T  70318 agacgtcacactcttacctaaaaccttaaggcagtgggtttatgggtcctcttacttataa 70378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 3670174 - 3670114
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||| | ||||||||||||||||| |||||||||    
T  3670174 agacaccacactcttacccaaaaccttaaggaaataggtttatgggtcctcatacttataa 3670114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 9483231 - 9483291
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | ||||||||||||||| || | |||||||||||||||||||||||||    
T  9483231 agacaccacactcttacccaaaaccttaagacaatgggtttatgggtcctcttacttataa 9483291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 30441199 - 30441139
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||| | |||||||||| ||||||||||||||    
T  30441199 agacaccacactcttacccaaaaccttaaggcaatgggtttatgggccctcttacttataa 30441139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 40991855 - 40991799
Alignment:
Q  88 ttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtattca 144  Q
    ||||||||||||||| ||||||| |||||||||||||||| |||||| |||| ||||    
T  40991855 ttaacccaaaaccttgaggcattgggtttatgggtcctctcacttatgaagtgttca 40991799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 40518691 - 40518636
Alignment:
Q  81 tcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||||| | ||||||||||||||| |||| |||||||||||||||||| ||||||    
T  40518691 tcacactcttacccaaaaccttaagtcattgggtttatgggtcctcttatttataa 40518636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 136
Target Start/End: Original strand, 43274824 - 43274883
Alignment:
Q  77 gacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||| |||||| | || |||||||||||| || |||||||||||||||||||||||||||    
T  43274824 gacaccacactcttactcaaaaccttaagacaataggtttatgggtcctcttacttataa 43274883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 136
Target Start/End: Complemental strand, 147559 - 147505
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||| | ||||||||| |||||||| |||||||||||||||||||| ||||||    
T  147559 cacactcttacccaaaactttaaggcaataggtttatgggtcctcttatttataa 147505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 9507890 - 9507828
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtattca 144  Q
    |||||| | |||||||||||||||| | | |||||||| |||||||||||||||| |||||||    
T  9507890 cacactcttacccaaaaccttaaggtaatgggtttatgagtcctcttacttataaggtattca 9507828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 136
Target Start/End: Complemental strand, 40518179 - 40518125
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||| | |||||||||||||||||||| |||||||||||||  ||||||||||    
T  40518179 cacactcttacccaaaaccttaaggcattgggtttatgggtccatttacttataa 40518125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 8794210 - 8794165
Alignment:
Q  91 acccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||||||||||  |||||||||||| ||||||||||||||||    
T  8794210 acccaaaaccttaagatattaggtttatgagtcctcttacttataa 8794165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 3669801 - 3669741
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||| |  ||||||| ||||||||||||||||    
T  3669801 agacaccacactcttacccaaaaccttaaggcaatgagtttatgagtcctcttacttataa 3669741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 9309077 - 9309033
Alignment:
Q  92 cccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||||||||| ||||| | |||||||||||||||||||||||||    
T  9309077 cccaaaacctttaggcaatgggtttatgggtcctcttacttataa 9309033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 20870617 - 20870677
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | | |||||| ||||||||| | |||||||||||||||||||||||||    
T  20870617 agacaccacactcttatccaaaatcttaaggcagtgggtttatgggtcctcttacttataa 20870677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 30359385 - 30359325
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||  | ||||||||||||||||| |||||||    
T  30359385 agacaccacactcttacccaaaaccttaaggctatgggtttatgggtcctcttgcttataa 30359325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 33113411 - 33113471
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||| ||||||||| |  ||||||||||||||||||||||||    
T  33113411 agacaccacactcttacccaaaatcttaaggcaatgagtttatgggtcctcttacttataa 33113471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 40579550 - 40579610
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | ||| |||||||||| ||| || ||||||||||||||||||||||||    
T  40579550 agacaccacactcttacctaaaaccttaaagcaataagtttatgggtcctcttacttataa 40579610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 45121704 - 45121760
Alignment:
Q  80 atcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||| | || ||||||||||||||  ||||||||||| |||||||||||||||    
T  45121704 atcacactcttactcaaaaccttaaggctgtaggtttatggatcctcttacttataa 45121760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 2441197 - 2441240
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatg 119  Q
    |||||||| ||||||||||||||||||||| ||||||| |||||    
T  2441197 agacatcatactttaacccaaaaccttaagacattaggattatg 2441240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 127
Target Start/End: Original strand, 30737670 - 30737713
Alignment:
Q  84 cactttaacccaaaaccttaaggcattaggtttatgggtcctct 127  Q
    |||||||||||||||||||| | |||| ||||||||||||||||    
T  30737670 cactttaacccaaaaccttatgacattgggtttatgggtcctct 30737713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 34835322 - 34835263
Alignment:
Q  77 gacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||| |||||| | ||||||||| |||||||| |  ||||||||||||||||||||||||    
T  34835322 gacaccacactcttacccaaaactttaaggcaatgagtttatgggtcctcttacttataa 34835263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 34835588 - 34835529
Alignment:
Q  77 gacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||| |||||| | ||||||||| |||||||| |  ||||||||||||||||||||||||    
T  34835588 gacaccacactcttacccaaaactttaaggcaatgagtttatgggtcctcttacttataa 34835529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 34835854 - 34835795
Alignment:
Q  77 gacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||| |||||| | ||||||||| |||||||| |  ||||||||||||||||||||||||    
T  34835854 gacaccacactcttacccaaaactttaaggcaatgagtttatgggtcctcttacttataa 34835795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 147934 - 147888
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggt 122  Q
    ||||| |||||| | |||||||||||||||||| |||||||||||||    
T  147934 agacaccacactcttacccaaaaccttaaggcaataggtttatgggt 147888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 1513965 - 1514019
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||| ||||||||||||||||   | |||||| ||||||||||||||||||    
T  1513965 cacacttttacccaaaaccttaaggttatgggtttaagggtcctcttacttataa 1514019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 5974658 - 5974596
Alignment:
Q  77 gacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagt 139  Q
    ||||| ||| ||||||| ||||| ||||| |||||||||||| |||| ||| |||||||||||    
T  5974658 gacattacattttaaccaaaaacattaagacattaggtttataggtcatctcacttataaagt 5974596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 45121960 - 45122022
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtattca 144  Q
    |||||| | |||||||| ||||||||| |  ||||||| ||||||||||||||||||| ||||    
T  45121960 cacactgttacccaaaatcttaaggcaatgagtttatgagtcctcttacttataaagtgttca 45122022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 5420746 - 5420705
Alignment:
Q  95 aaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||||||||| | |||||||| ||||||||||||||||    
T  5420746 aaaaccttaaggcaatgggtttatgagtcctcttacttataa 5420705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 5915981 - 5915928
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctctta 129  Q
    ||||| |||||| | |||||||||||||||||| |  |||||||||||||||||    
T  5915981 agacaccacactcttacccaaaaccttaaggcaatgagtttatgggtcctctta 5915928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 11442952 - 11442911
Alignment:
Q  91 acccaaaaccttaaggcattaggtttatgggtcctcttactt 132  Q
    ||||||||||||||||||||  ||||||||||||||| ||||    
T  11442952 acccaaaaccttaaggcattgagtttatgggtcctctcactt 11442911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 45122723 - 45122678
Alignment:
Q  91 acccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||||||||||||| || |  ||||||||||||||||||||||||    
T  45122723 acccaaaaccttaagacaatgagtttatgggtcctcttacttataa 45122678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 25561876 - 25561920
Alignment:
Q  92 cccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||||||||| || |  ||||||||||||||||||||||||    
T  25561876 cccaaaaccttaagacaatgagtttatgggtcctcttacttataa 25561920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 34834990 - 34834930
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||| |  ||||||| ||| ||||||||||||    
T  34834990 agacaccacactcttacccaaaaccttaaggcaatgagtttatgagtcatcttacttataa 34834930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 37544530 - 37544594
Alignment:
Q  72 agaaagacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||||||| |||||| | |||||||||||||| | | | | ||||||||||||||| |||||||    
T  37544530 agaaagacaccacactcttacccaaaaccttaaagtaatggatttatgggtcctctttcttataa 37544594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 25328049 - 25327989
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  25328049 agacaccacactcttacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 25327989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 32445999 - 32445936
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagt 139  Q
    ||||| |||||||||||||||||||||||||| || |||||||||||||||| |||| ||||||    
T  32445999 agacaccacactttaacccaaaaccttaaggcgttgggtttatgggtcctctcacttgtaaagt 32445936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 26074726 - 26074666
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||| | |||||||||||||||||||||||||    
T  26074726 agacaccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataa 26074666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 27502080 - 27502140
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||||| ||| |||| ||||||||| |||||||||||||||||||||||||||    
T  27502080 agacaccacacttttaccaaaaatcttaaggcaataggtttatgggtcctcttacttataa 27502140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 41170752 - 41170688
Alignment:
Q  72 agaaagacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| ||| |||||| | |||||||||||||||||| | |||||||||||||||||||||||||    
T  41170752 agaaaaacaccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataa 41170688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 13415810 - 13415864
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||| | |||||||||||||||| | |||||||||||||||||||||||||||    
T  13415810 cacactcttacccaaaaccttaaggtaataggtttatgggtcctcttacttataa 13415864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 18603170 - 18603224
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||| | |||||||||||||||||| | |||||||||||||||||||||||||    
T  18603170 cacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataa 18603224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 32487502 - 32487448
Alignment:
Q  81 tcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttata 135  Q
    ||||||| | |||||||||||||||||| | ||||||||||||||||||||||||    
T  32487502 tcacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttata 32487448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 26075221 - 26075266
Alignment:
Q  91 acccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||||||||||||| | |||||||||||||||||||||||||    
T  26075221 acccaaaaccttaaggcaatgggtttatgggtcctcttacttataa 26075266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 9498698 - 9498758
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||| ||||||||| | |||||||||||||||||||||||||    
T  9498698 agacaccacactcttacccaaaatcttaaggcaatgggtttatgggtcctcttacttataa 9498758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 40296359 - 40296419
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | ||||||||||| |||||| | |||||||||||||||||||||||||    
T  40296359 agacaccacactcttacccaaaacctcaaggcaatgggtttatgggtcctcttacttataa 40296419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 41632896 - 41632836
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||| ||||| ||||| |||||||||||||||||||||||||    
T  41632896 agacaccacactcttacccaaaatcttaaagcattgggtttatgggtcctcttacttataa 41632836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 42405640 - 42405696
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttactt 132  Q
    ||||| |||||| | ||||||||||||||||||||||||||||| ||||| ||||||    
T  42405640 agacaccacactcttacccaaaaccttaaggcattaggtttatgagtccttttactt 42405696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 136
Target Start/End: Original strand, 3295405 - 3295448
Alignment:
Q  93 ccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||||||||||| | |||||||||||||||||||||||||    
T  3295405 ccaaaaccttaaggcaattggtttatgggtcctcttacttataa 3295448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 1028567 - 1028629
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtattca 144  Q
    |||||| | ||| ||||||||||||   |||||||||||||||||||||||||||||| ||||    
T  1028567 cacactcttaccaaaaaccttaaggttataggtttatgggtcctcttacttataaagtgttca 1028629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 34753075 - 34753129
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||| | |||||||||||||||||| | |||||||||||| ||||||||||||    
T  34753075 cacactcttacccaaaaccttaaggcaatcggtttatgggtcttcttacttataa 34753129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 6500564 - 6500504
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||| | ||||||  |||||||||||||||||    
T  6500564 agacaccacactcttacccaaaaccttaaggcaatgggtttaaaggtcctcttacttataa 6500504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 11417025 - 11417081
Alignment:
Q  80 atcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||| | || ||||||||||||||| | ||||||||| |||||||||||||||    
T  11417025 atcacactcttacacaaaaccttaaggcaatgggtttatggatcctcttacttataa 11417081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 15370213 - 15370153
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||  | | |||||||||||||||||||||||    
T  15370213 agacaccacactcttacccaaaaccttaaggctgtggatttatgggtcctcttacttataa 15370153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 26074841 - 26074885
Alignment:
Q  91 acccaaaaccttaaggcattaggtttatgggtcctcttacttata 135  Q
    ||||||||||||||| || ||||||||||||||||| ||||||||    
T  26074841 acccaaaaccttaagacaataggtttatgggtcctcctacttata 26074885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 136
Target Start/End: Complemental strand, 15370498 - 15370456
Alignment:
Q  94 caaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||||||||||||  | |||||||||||||||||||||||||    
T  15370498 caaaaccttaaggctatgggtttatgggtcctcttacttataa 15370456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 26074190 - 26074244
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttac 130  Q
    ||||| |||||| | |||||||||||||||||| | |||| ||||||||||||||    
T  26074190 agacaccacactcttacccaaaaccttaaggcaatgggttcatgggtcctcttac 26074244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 33747885 - 33747819
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtatt 142  Q
    ||||| |||||| | | |||||| ||||||||| |  |||||||| |||||||||||||||||||||    
T  33747885 agacaccacactcttatccaaaatcttaaggcaatgagtttatggatcctcttacttataaagtatt 33747819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 112
Target Start/End: Complemental strand, 2828165 - 2828132
Alignment:
Q  79 catcacactttaacccaaaaccttaaggcattag 112  Q
    ||||| ||||||||||||||||||||||||||||    
T  2828165 catcaaactttaacccaaaaccttaaggcattag 2828132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 3295074 - 3295119
Alignment:
Q  91 acccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||||||||| |||||| | |||||||||||| ||||||||||||    
T  3295074 acccaaaacctcaaggcaatgggtttatgggtcttcttacttataa 3295119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 36521946 - 36521991
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctct 127  Q
    |||||| | |||||||||||||||||| | ||||||||||||||||    
T  36521946 cacactcttacccaaaaccttaaggcaattggtttatgggtcctct 36521991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 624310 - 624250
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | ||||||||||| |||||  | |||||||||||| ||||||||||||    
T  624310 agacaccacactcttacccaaaacctcaaggctatgggtttatgggtcatcttacttataa 624250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 9510589 - 9510625
Alignment:
Q  101 ttaaggcattaggtttatgggtcctcttacttataaa 137  Q
    |||||||||||||||||||| |||||| |||||||||    
T  9510589 ttaaggcattaggtttatggctcctctcacttataaa 9510625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 13786045 - 13786113
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtattca 144  Q
    |||||||||||| | | |||||| |||||| || ||| |||| ||||| ||||||||||||||| ||||    
T  13786045 agacatcacactcttatccaaaatcttaagacaatagatttacgggtcatcttacttataaagtgttca 13786113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 35150120 - 35150061
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||||| ||||||||||||||| || | | ||||||||| |||||||||||||    
T  35150120 agacaccacacttttacccaaaaccttaagacaatggatttatgggt-ctcttacttataa 35150061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 38796679 - 38796724
Alignment:
Q  91 acccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  38796679 acccaaaaccttaaggcattaggtttatgggtcctcttacttataa 38796724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 5542669 - 5542729
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | ||| |||||||||||||| |||||||||||||||||||||||||||    
T  5542669 agacaccacactcttaccaaaaaccttaaggcaataggtttatgggtcctcttacttataa 5542729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 36178649 - 36178709
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||| | |||||||||||||||||||||||||    
T  36178649 agacaccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataa 36178709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 6421852 - 6421793
Alignment:
Q  69 gttagaaagacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctctt 128  Q
    |||||| ||||| |||||| | |||||||||||||||||| |||||||||||||||||||    
T  6421852 gttagagagacaccacactcttacccaaaaccttaaggcaataggtttatgggtcctctt 6421793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 14745717 - 14745771
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||| | |||||||||||||||||| | |||||||||||||||||||||||||    
T  14745717 cacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataa 14745771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 136
Target Start/End: Complemental strand, 15880371 - 15880317
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||| | |||||||||||||||||| | |||||||||||||||||||||||||    
T  15880371 cacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataa 15880317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 36005930 - 36005984
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||| |||||||||||||||||| |  ||||||||||||||||||||||||    
T  36005930 cacacttttacccaaaaccttaaggcaatgagtttatgggtcctcttacttataa 36005984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 6713091 - 6713030
Alignment:
Q  76 agacatcacactttaacccaaaa-ccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||||||| | |||||||| |||||| ||| |||||||||||||||||||||||||||    
T  6713091 agacatcacactcttacccaaaaaccttaaagcaataggtttatgggtcctcttacttataa 6713030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 33731747 - 33731702
Alignment:
Q  91 acccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||    
T  33731747 acccaaaaccttaaggcaataggtttatggatcctcttacttataa 33731702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 5543042 - 5543102
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||| ||||||||| ||||||||||| |||||||||||||||    
T  5543042 agacaccacactcttacccaaaatcttaaggcaataggtttatggatcctcttacttataa 5543102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 28254281 - 28254341
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||| |  ||||||||||||||||||||||||    
T  28254281 agacaccacactcttacccaaaaccttaaggcaatgagtttatgggtcctcttacttataa 28254341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 136
Target Start/End: Complemental strand, 37106296 - 37106242
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||| | |||||||||||||||| | | |||||||||||||||||||||||||    
T  37106296 cacactcttacccaaaaccttaaggaaatgggtttatgggtcctcttacttataa 37106242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 25390313 - 25390374
Alignment:
Q  77 gacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaag 138  Q
    |||| |||||||  ||||||||||||||| || |||||||||||||| ||||| ||||||||    
T  25390313 gacaccacacttctacccaaaaccttaagacaataggtttatgggtcttcttagttataaag 25390374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 2336726 - 2336670
Alignment:
Q  88 ttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtattca 144  Q
    ||||||||||| |||||||||||   |||||||||||||| ||||||||||| ||||    
T  2336726 ttaacccaaaatcttaaggcattgaatttatgggtcctctcacttataaagtgttca 2336670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 15511539 - 15511599
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||| |||||| || | |||||||||||||||||||||||||    
T  15511539 agacaccacactcttacccaaaatcttaagacaatgggtttatgggtcctcttacttataa 15511599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 40733631 - 40733571
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | ||||||||| ||||||   |||||||||||||||||||||||||||    
T  40733631 agacaccacactcttacccaaaactttaaggttgtaggtttatgggtcctcttacttataa 40733571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 962711 - 962652
Alignment:
Q  77 gacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||| |||||| | ||||||||||||||| || | |||||||||||||||| ||||||||    
T  962711 gacaacacactcttacccaaaaccttaagacaatgggtttatgggtcctctcacttataa 962652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 2323717 - 2323667
Alignment:
Q  88 ttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagt 139  Q
    |||||| |||||||||||||||| ||||||||| |||||| |||||||||||    
T  2323717 ttaacctaaaaccttaaggcatt-ggtttatggatcctctcacttataaagt 2323667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 6421747 - 6421688
Alignment:
Q  69 gttagaaagacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctctt 128  Q
    |||||| ||||| |||||| | |||||||||||| || || |||||||||||||||||||    
T  6421747 gttagagagacaccacactcttacccaaaacctttagtcaataggtttatgggtcctctt 6421688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 14745344 - 14745395
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttactta 133  Q
    |||||| | |||||||||||||||||| | ||||||||||||||| ||||||    
T  14745344 cacactcttacccaaaaccttaaggcaatgggtttatgggtcctcatactta 14745395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 33561499 - 33561558
Alignment:
Q  80 atcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagt 139  Q
    |||||||| | ||||||||||||||| || |  ||||||||||||||| |||||||||||    
T  33561499 atcacactcttacccaaaaccttaagacaatgagtttatgggtcctctcacttataaagt 33561558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 2803211 - 2803257
Alignment:
Q  77 gacatcacactttaacccaaaaccttaaggcattaggtttatgggtc 123  Q
    ||||||||||||| ||||||||| ||||| ||||| |||||||||||    
T  2803211 gacatcacacttttacccaaaacgttaagacattaagtttatgggtc 2803257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 30312897 - 30312835
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtattca 144  Q
    |||||||| |||||||||||||||| | || ||||||||||| ||| | ||||||||| ||||    
T  30312897 cacacttttacccaaaaccttaaggaaataagtttatgggtcatctaagttataaagtgttca 30312835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 31259666 - 31259720
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||| | ||||||||||||||||   |||||||||||||| ||||||||||||    
T  31259666 cacactcttacccaaaaccttaaggtgataggtttatgggtcatcttacttataa 31259720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 31468797 - 31468847
Alignment:
Q  79 catcacactttaacccaaaaccttaaggcattaggtttatgggtcctctta 129  Q
    ||||||||| | |||||||||||||||||| |  |||||||||||||||||    
T  31468797 catcacactcttacccaaaaccttaaggcaatgagtttatgggtcctctta 31468847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 41283525 - 41283579
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||| | ||| |||||||||||||| |  ||||||||||||||||||||||||    
T  41283525 cacactcttacctaaaaccttaaggcaatgagtttatgggtcctcttacttataa 41283579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 136
Target Start/End: Complemental strand, 42514757 - 42514703
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||| | |||||||| ||||||||  | |||||||||||||||||||||||||    
T  42514757 cacactcttacccaaaatcttaaggcgatgggtttatgggtcctcttacttataa 42514703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 40163416 - 40163477
Alignment:
Q  76 agacatcacactttaacccaaaacctt-aaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||||| |||||||||||| ||| || |||||| ||||||| ||||||||||||    
T  40163416 agacaccacacttttacccaaaaccttaaagacactaggttaatgggtcatcttacttataa 40163477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 41678430 - 41678474
Alignment:
Q  94 caaaaccttaaggcattaggtttatgggtcctcttacttataaagt 139  Q
    |||||||||||||||  ||||||||||||||||| |||||||||||    
T  41678430 caaaaccttaaggcaa-aggtttatgggtcctctcacttataaagt 41678474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 6421499 - 6421439
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | ||||||||||| |||||| |  ||||||| ||||||||||||||||    
T  6421499 agacaccacactcttacccaaaacctcaaggcaatgagtttatgagtcctcttacttataa 6421439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 6422224 - 6422164
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | ||| |||||||||||||  | |||||||||||||||||| ||||||    
T  6422224 agacaccacactcttacctaaaaccttaaggctatgggtttatgggtcctcttaattataa 6422164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 31385835 - 31385791
Alignment:
Q  92 cccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||||||||||||||| | |||||||||||||| | ||||||||    
T  31385835 cccaaaaccttaaggcaatgggtttatgggtcctttcacttataa 31385791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 37106038 - 37105978
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||| ||||||||| |  |||||||||||| |||||||||||    
T  37106038 agacaccacactcttacccaaaatcttaaggcaatgagtttatgggtccccttacttataa 37105978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 38796290 - 38796322
Alignment:
Q  104 aggcattaggtttatgggtcctcttacttataa 136  Q
    ||||||||||||||| |||||||||||||||||    
T  38796290 aggcattaggtttataggtcctcttacttataa 38796322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 554 - 618
Alignment:
Q  72 agaaagacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||||||| |||||| | |||||||||||||||||| | |||||||||||||||||||||||||    
T  554 agaaagacaccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataa 618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 23421 - 23481
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||| |||||||||||||||||||||||||||    
T  23421 agacaccacactcttacccaaaaccttaaggcaataggtttatgggtcctcttacttataa 23481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 45434750 - 45434690
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||||||| | |||||||||||||||||| || ||||||||||||||||||||||||    
T  45434750 agacatcacactcttacccaaaaccttaaggcagtaagtttatgggtcctcttacttataa 45434690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 1085666 - 1085728
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtattca 144  Q
    |||||| | |||||||||||||||||| | |||||||||||||||||||||||||||| ||||    
T  1085666 cacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataaagtgttca 1085728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 7517694 - 7517634
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||| | |||||||||||||||||||||||||    
T  7517694 agacaccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataa 7517634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 22566712 - 22566766
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||| | |||||||||||||||||| | |||||||||||||||||||||||||    
T  22566712 cacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataa 22566766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 36534834 - 36534888
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||| | ||||||||||||||| | ||||||||||||||||||||||||||||    
T  36534834 cacactcttacccaaaaccttaagactttaggtttatgggtcctcttacttataa 36534888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 36939783 - 36939837
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||| |||||||||||||||||| | | |||||||||||||||||||||||    
T  36939783 cacacttttacccaaaaccttaaggcaatggatttatgggtcctcttacttataa 36939837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 16569291 - 16569242
Alignment:
Q  95 aaaaccttaaggcattaggtttatgggtcctcttacttataaagtattca 144  Q
    |||||||||||||| | ||||||||||||||||||||||||| |||||||    
T  16569291 aaaaccttaaggcaatgggtttatgggtcctcttacttataaggtattca 16569242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 16596371 - 16596420
Alignment:
Q  95 aaaaccttaaggcattaggtttatgggtcctcttacttataaagtattca 144  Q
    |||||||||||||| | ||||||||||||||||||||||||| |||||||    
T  16596371 aaaaccttaaggcaatgggtttatgggtcctcttacttataaggtattca 16596420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 6054674 - 6054614
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||| |  ||||||||||||||||||||||||    
T  6054674 agacaccacactcttacccaaaaccttaaggcaatgtgtttatgggtcctcttacttataa 6054614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 30244384 - 30244324
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||| | |||||||| ||||||||||||||||    
T  30244384 agacaccacactcttacccaaaaccttaaggcaatgggtttatgagtcctcttacttataa 30244324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 37533055 - 37533114
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| ||||||||| ||||||||||||||||| |  ||||||||||||||||||||||||    
T  37533055 agacaccacacttta-cccaaaaccttaaggcaatgagtttatgggtcctcttacttataa 37533114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 37533408 - 37533468
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||| | | |||||||||||||||||||||||    
T  37533408 agacaccacactcttacccaaaaccttaaggcaatggatttatgggtcctcttacttataa 37533468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 33773350 - 33773288
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaag 138  Q
    |||| |||||||||||||||||| |||||  |||||| |||||||||||||| || |||||||    
T  33773350 agacctcacactttaacccaaaatcttaaaacattagatttatgggtcctctcacatataaag 33773288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 7554139 - 7554079
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||  | ||||||||| |||||||||||||||    
T  7554139 agacaccacactcttacccaaaaccttaaggctatgggtttatggatcctcttacttataa 7554079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 11845305 - 11845245
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | | |||||||||||||||| | | |||||||||||||||||||||||    
T  11845305 agacaccacactcttatccaaaaccttaaggcaatggatttatgggtcctcttacttataa 11845245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 19122845 - 19122785
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||| | | |||||| ||||||||||||||||    
T  19122845 agacaccacactcttacccaaaaccttaaggcaatggatttatgagtcctcttacttataa 19122785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 22567083 - 22567143
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | ||| |||||||||||||| |  ||||||||||||||||||||||||    
T  22567083 agacaccacactcttaccaaaaaccttaaggcaatgagtttatgggtcctcttacttataa 22567143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 29157679 - 29157619
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||| | | |||||||||| ||||||||||||    
T  29157679 agacaccacactcttacccaaaaccttaaggcaatggatttatgggtcgtcttacttataa 29157619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 30245191 - 30245131
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||| |  ||||||||||| ||||||||||||    
T  30245191 agacaccacactcttacccaaaaccttaaggcaatgagtttatgggtcgtcttacttataa 30245131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 30253606 - 30253546
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||| |  |||||||||| |||||||||||||    
T  30253606 agacaccacactcttacccaaaaccttaaggcaatgagtttatgggttctcttacttataa 30253546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 40230335 - 40230395
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| || ||||| ||||||||||||||| |  | |||||||||||||||||||||||||    
T  40230335 agacaccagacttttacccaaaaccttaagactatgggtttatgggtcctcttacttataa 40230395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 41854752 - 41854688
Alignment:
Q  72 agaaagacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||| ||||||| | |||||||||||||||||||||  ||||| |||| |||| |||||||    
T  41854752 agaaagacgtcacactcttacccaaaaccttaaggcattatatttataggtcatcttgcttataa 41854688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 45433355 - 45433295
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||| ||||||||| |||||||||| || |||||||||||||    
T  45433355 agacaccacactcttacccaaaatcttaaggcaataggtttatgagttctcttacttataa 45433295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 45679490 - 45679542
Alignment:
Q  89 taacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtat 141  Q
    ||||||||||| |||||| |||| |||||| |||||||| |||||||||||||    
T  45679490 taacccaaaactttaaggtattaagtttataggtcctctcacttataaagtat 45679542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 30032676 - 30032621
Alignment:
Q  81 tcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||||| | |||||||||||||||||  ||||||||||| | |||||||||||||    
T  30032676 tcacactcttacccaaaaccttaaggctataggtttatggatactcttacttataa 30032621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 40094824 - 40094878
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||| | ||||||||||||||| |  | |||||||||||||||||||||||||    
T  40094824 cacactcttacccaaaaccttaagacgatgggtttatgggtcctcttacttataa 40094878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 14681624 - 14681567
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttactta 133  Q
    ||||| |||||| | ||||||||||||||| || | |||||||||| |||||||||||    
T  14681624 agacaccacactcttacccaaaaccttaagacaatgggtttatgggccctcttactta 14681567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 23569046 - 23569091
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatggg 121  Q
    |||||||||||| | |||||||||||||||||| | ||||||||||    
T  23569046 agacatcacactcttacccaaaaccttaaggcaatgggtttatggg 23569091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 47129194 - 47129149
Alignment:
Q  91 acccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||||||||| ||  | |||||||||||||||||||||||||    
T  47129194 acccaaaaccttaaagcgatgggtttatgggtcctcttacttataa 47129149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 1085298 - 1085350
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttat 134  Q
    |||||| | |||||||||||||||||| |  |||||||||| |||||||||||    
T  1085298 cacactcttacccaaaaccttaaggcaatgagtttatgggttctcttacttat 1085350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 146
Target Start/End: Complemental strand, 24177543 - 24177479
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtattcagc 146  Q
    |||||| | ||| ||||| |||||||| | ||||||||||||| ||||||||||| || ||||||    
T  24177543 cacactcttaccaaaaactttaaggcaatgggtttatgggtccgcttacttataaggtgttcagc 24177479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 28301613 - 28301657
Alignment:
Q  102 taaggcattaggtttatgggtcctcttacttataaagtattcagc 146  Q
    ||||||| | ||||||||||||||||||||||||| || ||||||    
T  28301613 taaggcaatgggtttatgggtcctcttacttataaggtgttcagc 28301657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 34218078 - 34218138
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | ||||||||||||||| || | |||||||| ||||||| ||||||||    
T  34218078 agacaccacactcttacccaaaaccttaagacaatgggtttatgagtcctctcacttataa 34218138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 43241609 - 43241549
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||| ||||| ||| ||||||||||| || || ||||||| ||||| ||||||||||    
T  43241609 agacatcatacttttacctaaaaccttaagtcaataagtttatgagtccttttacttataa 43241549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 45754829 - 45754769
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||  | |||||||| ||| ||||||||||||    
T  45754829 agacaccacactcttacccaaaaccttaaggctatgggtttatgagtcatcttacttataa 45754769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 2377872 - 2377808
Alignment:
Q  72 agaaagacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||||||| |||||| | |||||||||||||||||| | |||||||||||||||||||||||||    
T  2377872 agaaagacaccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataa 2377808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 10074035 - 10074095
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||||| |||||||||||||||||| | |||||||||||||||||||||||||    
T  10074035 agacaccacacttttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataa 10074095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 2578487 - 2578555
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtattca 144  Q
    ||||| |||||| | |||||||||||||||||  | |||||||||||||||||||||||||||| ||||    
T  2578487 agacaccacactcttacccaaaaccttaaggctatgggtttatgggtcctcttacttataaagtgttca 2578555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 136
Target Start/End: Complemental strand, 16455015 - 16454961
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||| | |||||||||||||||||| |||||||||||||||| ||||||||||    
T  16455015 cacactcttacccaaaaccttaaggcaataggtttatgggtcctattacttataa 16454961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 3409373 - 3409313
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||| |  ||||||||||||||||||||||||    
T  3409373 agacaccacactcttacccaaaaccttaaggcaatgagtttatgggtcctcttacttataa 3409313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 10074407 - 10074467
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||| |  ||||||||||||||||||||||||    
T  10074407 agacaccacactcttacccaaaaccttaaggcaatgagtttatgggtcctcttacttataa 10074467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 16107792 - 16107732
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||| | |||||||| ||||||||||||||||    
T  16107792 agacaccacactcttacccaaaaccttaaggcaatgggtttatgagtcctcttacttataa 16107732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 26544163 - 26544103
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||||||| | || ||||||||||||||  | |||||||||||||||||||||||||    
T  26544163 agacatcacactcttactcaaaaccttaaggcggtgggtttatgggtcctcttacttataa 26544103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 29518617 - 29518557
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||| | | |||||||||||||||||||||||||    
T  29518617 agacaccacactcttacccaaaaccttaaggtaatgggtttatgggtcctcttacttataa 29518557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 29519034 - 29518974
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||| | | |||||||||||||||||||||||||    
T  29519034 agacaccacactcttacccaaaaccttaaggtaatgggtttatgggtcctcttacttataa 29518974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 32460620 - 32460684
Alignment:
Q  72 agaaagacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||  ||||||| | |||||||||||||||||| | |||||||| ||||||||||||||||    
T  32460620 agaaagatgtcacactcttacccaaaaccttaaggcaatgggtttatgagtcctcttacttataa 32460684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 32741293 - 32741233
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||| | | |||||||||||||||||||||||||    
T  32741293 agacaccacactcttacccaaaaccttaaggtaatgggtttatgggtcctcttacttataa 32741233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 3415572 - 3415513
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttata 135  Q
    ||||| |||||| | ||| |||||||||||||| | ||||||||||||||||||||||||    
T  3415572 agacaccacactcttaccaaaaaccttaaggcaatgggtttatgggtcctcttacttata 3415513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 593759 - 593813
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||| | |||||||||||||||||| | |||||||| ||||||||||||||||    
T  593759 cacactattacccaaaaccttaaggcagtcggtttatgagtcctcttacttataa 593813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 136
Target Start/End: Complemental strand, 35210312 - 35210258
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||| | |||||||||||||||||| | | |||||||||||||||||||||||    
T  35210312 cacactcttacccaaaaccttaaggcaatggttttatgggtcctcttacttataa 35210258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 2579536 - 2579601
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtat 141  Q
    ||||| || ||||| |||||||||||||||||| |  ||||||||| |||||||||||||| ||||    
T  2579536 agacaccatacttttacccaaaaccttaaggcaatgagtttatgggccctcttacttataaggtat 2579601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 2579931 - 2579976
Alignment:
Q  91 acccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||||||||||||  | |||||||||||||||||||||||||    
T  2579931 acccaaaaccttaaggctgtgggtttatgggtcctcttacttataa 2579976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 1950229 - 1950285
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttactt 132  Q
    |||| ||||||| | || ||||||||||||||||||| ||||||| |||||||||||    
T  1950229 agacgtcacactcttactcaaaaccttaaggcattagatttatggctcctcttactt 1950285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 3058340 - 3058280
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||| | ||||||||| ||||| |||||||||    
T  3058340 agacaccacactcttacccaaaaccttaaggcaatgggtttatggatcctcatacttataa 3058280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 136
Target Start/End: Complemental strand, 16454672 - 16454629
Alignment:
Q  93 ccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||| ||||||||| | |||||||||||||||||||||||||    
T  16454672 ccaaaatcttaaggcaatgggtttatgggtcctcttacttataa 16454629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 136
Target Start/End: Complemental strand, 1127468 - 1127414
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||| | |||||||||||||||| | | |||||||| ||||||||||||||||    
T  1127468 cacactcttacccaaaaccttaaggtaatgggtttatgagtcctcttacttataa 1127414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 2378221 - 2378180
Alignment:
Q  95 aaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||||||| | | |||||||||||||||||||||||||    
T  2378221 aaaaccttaaggtaatgggtttatgggtcctcttacttataa 2378180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 16108154 - 16108117
Alignment:
Q  99 ccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||||| | |||||||||||||||||||||||||    
T  16108154 ccttaaggcaatgggtttatgggtcctcttacttataa 16108117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 1846862 - 1846802
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | | |||||||||||||||| | | ||||||||| |||||||||||||    
T  1846862 agacaccacactcttatccaaaaccttaaggcaatggatttatgggtgctcttacttataa 1846802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 2578879 - 2578947
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtattca 144  Q
    ||||| |||||| | |||||||||||||||| | |  |||||||| |||||||| |||||| |||||||    
T  2578879 agacaccacactcttacccaaaaccttaaggtaatgagtttatggatcctcttatttataaggtattca 2578947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 3409774 - 3409714
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | ||||||||  | |||||| | |||||||||||||||||||||||||    
T  3409774 agacaccacactcttacccaaaaaataaaggcaatgggtttatgggtcctcttacttataa 3409714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 54018242 - 54018302
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | ||||||||||||||||| ||||||||||||||||||||||||||||    
T  54018242 agacaccacactcttacccaaaaccttaaggcgttaggtttatgggtcctcttacttataa 54018302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 137
Target Start/End: Complemental strand, 25991511 - 25991456
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaa 137  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||    
T  25991511 cacactttaacccaaaaccttaaggcattaggtttataggttctctcacttataaa 25991456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 41359824 - 41359877
Alignment:
Q  91 acccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtattca 144  Q
    |||||||||||||||||| | ||||||||||||||||||||||||| |||||||    
T  41359824 acccaaaaccttaaggcaatgggtttatgggtcctcttacttataaggtattca 41359877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 8328018 - 8327958
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | ||||||||||||||||||||| |||||||||| |||||||||||||    
T  8328018 agacaccacactcttacccaaaaccttaaggcattacgtttatgggttctcttacttataa 8327958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 22304683 - 22304615
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtattca 144  Q
    ||||| |||||| | |||||||||||||||||| |  |||||||||||||||||||||||| |||||||    
T  22304683 agacaccacactcttacccaaaaccttaaggcaatgtgtttatgggtcctcttacttataaggtattca 22304615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 32589817 - 32589757
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||||| |||| | |||||||||||||||||| | |||||||||||||||||||||||||    
T  32589817 agacatcgcactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataa 32589757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 35946636 - 35946576
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||||| ||||||||||||||||||   |||||||||||||||||||||||||    
T  35946636 agacaccacacttttacccaaaaccttaaggcaacgggtttatgggtcctcttacttataa 35946576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 54017860 - 54017920
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | ||||||||||||||||| ||||||||||| ||||||||||||||||    
T  54017860 agacaccacactcttacccaaaaccttaaggcgttaggtttatgagtcctcttacttataa 54017920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 47964568 - 47964621
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttata 135  Q
    |||||| | |||||||||||||||||| |||||||||||||||||| |||||||    
T  47964568 cacactcttacccaaaaccttaaggcaataggtttatgggtcctctcacttata 47964621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 3384325 - 3384373
Alignment:
Q  91 acccaaaaccttaaggcattaggtttatgggtcctcttacttataaagt 139  Q
    ||||||||| ||||||||||| |||||||||||||||| ||||||||||    
T  3384325 acccaaaactttaaggcattaagtttatgggtcctcttccttataaagt 3384373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 12114606 - 12114666
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | ||||||||||||||| || | |||||||||||||||||||||||||    
T  12114606 agacaccacactcttacccaaaaccttaagacaatgggtttatgggtcctcttacttataa 12114666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 25991141 - 25991073
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtattca 144  Q
    |||||||| |||||||||||||| |||||||| ||||||||| |||| |||| | |||| |||||||||    
T  25991141 agacatcaaactttaacccaaaatcttaaggcgttaggtttacgggttctctcaattattaagtattca 25991073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 22303709 - 22303759
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttactt 132  Q
    |||||| | |||||||||||||||||| | |||||||||||||||||||||    
T  22303709 cacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttactt 22303759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 29644952 - 29645006
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||| | ||||||||||||||| || | |||||||||||||||||||||||||    
T  29644952 cacactcttacccaaaaccttaagacaatgggtttatgggtcctcttacttataa 29645006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 1634373 - 1634418
Alignment:
Q  91 acccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||||||||||||| || | |||||||||||||||||||||||||    
T  1634373 acccaaaaccttaagccaatgggtttatgggtcctcttacttataa 1634418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 33362352 - 33362405
Alignment:
Q  91 acccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtattca 144  Q
    |||||||| ||||||| | | ||||||||||||||||||||||||| |||||||    
T  33362352 acccaaaatcttaaggaaatgggtttatgggtcctcttacttataaggtattca 33362405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 22303999 - 22304059
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | | |||||||||||||||| | ||||||||||||| |||||||||||    
T  22303999 agacaccacactcttatccaaaaccttaaggcaatgggtttatgggtccgcttacttataa 22304059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 32462944 - 32463012
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtattca 144  Q
    ||||| |||||| | || ||||||||||||||| | |||||||| ||| |||||||||||| |||||||    
T  32462944 agacaccacactcttactcaaaaccttaaggcaatgggtttatgagtcttcttacttataaggtattca 32463012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 37990683 - 37990743
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||| |  ||||||| ||||||||||||||||    
T  37990683 agacaccacactcttacccaaaaccttaaggcaatgagtttatgagtcctcttacttataa 37990743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 39914366 - 39914306
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | | ||||||  ||||||||||||||||||||||||||||| ||||||    
T  39914366 agacaccacactcttatccaaaatattaaggcattaggtttatgggtcctcttatttataa 39914306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 39934999 - 39935059
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||||||| | || |||||| |||||||| | ||||||||| |||||||||||||||    
T  39934999 agacatcacactcttactcaaaactttaaggcaatgggtttatggatcctcttacttataa 39935059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 42342432 - 42342492
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||| ||||||| | ||||||||||||||| || | | |||||||||||||||||||||||    
T  42342432 agacgtcacactcttacccaaaaccttaagacaatggatttatgggtcctcttacttataa 42342492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 43346835 - 43346895
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||| |  |||||||||| |||||||||||||    
T  43346835 agacaccacactcttacccaaaaccttaaggcaatgagtttatgggttctcttacttataa 43346895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 52634789 - 52634730
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||| ||||||| | |||||||||||||||||| | ||||||||||| |||||||||||||    
T  52634789 agacgtcacactcttacccaaaaccttaaggcaatgggtttatgggt-ctcttacttataa 52634730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 127
Target Start/End: Original strand, 50329388 - 50329427
Alignment:
Q  88 ttaacccaaaaccttaaggcattaggtttatgggtcctct 127  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  50329388 ttaacccaaaaccttaaggcattggatttatgggtcctct 50329427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 136
Target Start/End: Complemental strand, 4823771 - 4823709
Alignment:
Q  74 aaagacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||||| |||||| | |||||||| ||||||||| |  |||||||||||||| |||||||||    
T  4823771 aaagacaccacactcttacccaaaatcttaaggcaatgagtttatgggtcctcctacttataa 4823709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 29644631 - 29644685
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||| | ||||||||||||||| || | ||||||||||| |||||||||||||    
T  29644631 cacactcttacccaaaaccttaagacaatgggtttatgggttctcttacttataa 29644685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 42342140 - 42342194
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||| | |||||||||||||||||| |  ||||||| ||||||||||||||||    
T  42342140 cacactcttacccaaaaccttaaggcaatgagtttatgagtcctcttacttataa 42342194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 46546371 - 46546437
Alignment:
Q  78 acatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtattca 144  Q
    |||||||||| | || ||||||||||||||| | ||||||||| | |||| ||||||||||| ||||    
T  46546371 acatcacactcttacacaaaaccttaaggcaatgggtttatggattctctaacttataaagtgttca 46546437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 33803302 - 33803355
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttata 135  Q
    |||||| | |||||| ||||||| ||| | ||||||||||||||||||||||||    
T  33803302 cacactcttacccaataccttaatgcaatgggtttatgggtcctcttacttata 33803355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 39389184 - 39389131
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctctta 129  Q
    ||||| |||||| | ||||||||||||||| || | ||||||||||||||||||    
T  39389184 agacaccacactcttacccaaaaccttaagacaatgggtttatgggtcctctta 39389131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 15772968 - 15772908
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | | |||||||||||| ||| |  ||||||||||||||||||||||||    
T  15772968 agacaccacactcttatccaaaaccttaaagcaatgagtttatgggtcctcttacttataa 15772908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 15773306 - 15773246
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||||||| | ||||||||| |||||||| |  | ||||| ||||||||||||||||    
T  15773306 agacatcacactcttacccaaaactttaaggcaatgagcttatgagtcctcttacttataa 15773246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 25317265 - 25317221
Alignment:
Q  83 acactttaacccaaaaccttaaggcattaggtttatgggtcctct 127  Q
    ||||||| ||||||||||||||||||  | |||||||||||||||    
T  25317265 acacttttacccaaaaccttaaggcaacaagtttatgggtcctct 25317221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 25739464 - 25739528
Alignment:
Q  71 tagaaagacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttata 135  Q
    |||| |||| ||||||| | ||||||||||| || ||| |  |||||||||||||||||||||||    
T  25739464 tagagagacgtcacactcttacccaaaacctaaaagcaatgagtttatgggtcctcttacttata 25739528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 37991021 - 37991081
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||  |  |||||| |||||||||||||||||    
T  37991021 agacaccacactcttacccaaaaccttaaggcgatgagtttataggtcctcttacttataa 37991081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 45395697 - 45395757
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | ||||||||| ||||| || | ||||||||| |||||||||||||||    
T  45395697 agacaccacactcttacccaaaacattaagacaatgggtttatggatcctcttacttataa 45395757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 47508147 - 47508199
Alignment:
Q  87 tttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagt 139  Q
    |||||| ||||||  |||||||||||||||||| ||| ||| |||||||||||    
T  47508147 tttaactcaaaactataaggcattaggtttatgagtcatctcacttataaagt 47508199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 11977394 - 11977334
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||||||| | ||||||||||||||||||||||||||||| || |||||||||||||    
T  11977394 agacatcacactcttacccaaaaccttaaggcattaggtttatgagtgctcttacttataa 11977334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 17294691 - 17294623
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtattca 144  Q
    ||||| |||||| | |||||||||||||||||| | |||||||||||||||||||||||||||| ||||    
T  17294691 agacaccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataaagtgttca 17294623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 31767205 - 31767265
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||| ||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||    
T  31767205 agacgtcacactcttacccaaaaccttaaggcattaggttaatgggtcctcttacttataa 31767265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 44290498 - 44290562
Alignment:
Q  72 agaaagacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||||||| || ||| | |||||||||||||||||| | |||||||||||||||||||||||||    
T  44290498 agaaagacaccatactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataa 44290562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 66137 - 66191
Alignment:
Q  82 cacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||| | |||||||||||||||||  |||||||||||||||||||||||||||    
T  66137 cacactcttacccaaaaccttaaggccataggtttatgggtcctcttacttataa 66191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 9956023 - 9955962
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggttt-atgggtcctcttacttataa 136  Q
    |||||||||||| | |||||||||||||||||| | ||||| ||||||||||||||||||||    
T  9956023 agacatcacactcttacccaaaaccttaaggcaattggtttaatgggtcctcttacttataa 9955962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 44290884 - 44290929
Alignment:
Q  91 acccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||||||||||||| | |||||||||||||||||||||||||    
T  44290884 acccaaaaccttaaggcaatgggtttatgggtcctcttacttataa 44290929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 14318981 - 14318921
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||| ||| |||||||||| ||||||||||||    
T  14318981 agacaccacactcttacccaaaaccttaaggcaatagatttatgggtcttcttacttataa 14318921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 34365039 - 34364979
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||  | |||||||||||||||||||||||||    
T  34365039 agacaccacactcttacccaaaaccttaaggctatgggtttatgggtcctcttacttataa 34364979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 41184489 - 41184537
Alignment:
Q  96 aaaccttaaggcattaggtttatgggtcctcttacttataaagtattca 144  Q
    ||||||||||||| | |||||||||||||||||||||||||||| ||||    
T  41184489 aaaccttaaggcaatgggtttatgggtcctcttacttataaagtgttca 41184537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 883615 - 883680
Alignment:
Q  72 agaaagacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaa 137  Q
    |||||||||  ||||||||||| ||||||||||| ||||| ||| ||| ||||||| |||||||||    
T  883615 agaaagacactacactttaacctaaaaccttaagacattaagttaatgagtcctctcacttataaa 883680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 45839730 - 45839685
Alignment:
Q  91 acccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||||||||||||||||  |||||||||| ||||||||||||    
T  45839730 acccaaaaccttaaggcattacatttatgggtcttcttacttataa 45839685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 3550834 - 3550774
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | ||||||||| |||||||| | |||||||| ||||||||||||||||    
T  3550834 agacaccacactcttacccaaaactttaaggcaatgggtttatgagtcctcttacttataa 3550774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 22077154 - 22077222
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtattca 144  Q
    |||| ||||||| | | ||||||||||| |||| |  |||||||||||||||||||||||| |||||||    
T  22077154 agacgtcacactcttatccaaaaccttagggcaatgagtttatgggtcctcttacttataaggtattca 22077222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 26661566 - 26661626
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||| |  ||||||||||||||| ||||||||    
T  26661566 agacaccacactcttacccaaaaccttaaggcaatgagtttatgggtcctctcacttataa 26661626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 26661942 - 26662002
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||| | |||||||||||| ||| ||||||||    
T  26661942 agacaccacactcttacccaaaaccttaaggcaatcggtttatgggtcttctcacttataa 26662002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 32594760 - 32594820
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | ||||||||||||||| || |  ||||||||||||||||||||||||    
T  32594760 agacaccacactcttacccaaaaccttaagacaatgagtttatgggtcctcttacttataa 32594820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 34364621 - 34364561
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||||||| | |||||||||||||||||  | |||||| || |||||||||||||||    
T  34364621 agacatcacactcttacccaaaaccttaaggctatgggtttacggatcctcttacttataa 34364561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 41157105 - 41157045
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||| ||| |  ||||||||||||||||||||||||    
T  41157105 agacaccacactcttacccaaaaccttaaagcaatgagtttatgggtcctcttacttataa 41157045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 41157489 - 41157429
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | || |||||||| |||||| | |||||||||||||||||||||||||    
T  41157489 agacaccacactcttactcaaaacctaaaggcaatgggtttatgggtcctcttacttataa 41157429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 50052067 - 50052127
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | ||||||||| |||||  | |||||||||||||||||||||||||||    
T  50052067 agacaccacactcttacccaaaactttaagaaaataggtttatgggtcctcttacttataa 50052127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 11977058 - 11977015
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatg 119  Q
    ||||| |||||| | |||||||||||||||||||||||||||||    
T  11977058 agacaccacactcttacccaaaaccttaaggcattaggtttatg 11977015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 122
Target Start/End: Complemental strand, 34649537 - 34649506
Alignment:
Q  91 acccaaaaccttaaggcattaggtttatgggt 122  Q
    ||||||||||||||||||||||||||||||||    
T  34649537 acccaaaaccttaaggcattaggtttatgggt 34649506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 139
Target Start/End: Original strand, 41184152 - 41184195
Alignment:
Q  96 aaaccttaaggcattaggtttatgggtcctcttacttataaagt 139  Q
    ||||||||||||| | ||||||||| ||||||||||||||||||    
T  41184152 aaaccttaaggcaatgggtttatggatcctcttacttataaagt 41184195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 30208239 - 30208189
Alignment:
Q  77 gacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctct 127  Q
    |||| ||||||||||||||||||||||| |||||  ||||| |||||||||    
T  30208239 gacaccacactttaacccaaaaccttaatgcattgagtttaagggtcctct 30208189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 66531 - 66576
Alignment:
Q  91 acccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||||||||||||  || |||||||| |||||||||||||||    
T  66531 acccaaaaccttaaggccatatgtttatggatcctcttacttataa 66576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 3875394 - 3875435
Alignment:
Q  95 aaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||||||||| | |||||||| ||||||||||||||||    
T  3875394 aaaaccttaaggcaatgggtttatgagtcctcttacttataa 3875435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 41142467 - 41142426
Alignment:
Q  95 aaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||||||||| | |||||||||||||| ||||||||||    
T  41142467 aaaaccttaaggcaatgggtttatgggtccttttacttataa 41142426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 29798313 - 29798253
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | | |||| ||||||||||| | |||||||| ||||||||||||||||    
T  29798313 agacaccacactcttatccaagaccttaaggcaatgggtttatgagtcctcttacttataa 29798253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 30576627 - 30576695
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataaagtattca 144  Q
    |||||| ||| ||| ||||||||| ||||| ||||| || |||||||||||| ||| ||||||| ||||    
T  30576627 agacattacatttttacccaaaacattaagacattatgtctatgggtcctctcactcataaagtgttca 30576695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 30630697 - 30630745
Alignment:
Q  91 acccaaaaccttaaggcattaggtttatgggtcctcttacttataaagt 139  Q
    ||||||||| |||||||| |  |||||||||| ||||||||||||||||    
T  30630697 acccaaaactttaaggcaatgtgtttatgggttctcttacttataaagt 30630745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 37556225 - 37556166
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||  | ||||||| |||||||||||||||||    
T  37556225 agacaccacactcttacccaaaaccttaaggctatgggtttat-ggtcctcttacttataa 37556166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 37850664 - 37850704
Alignment:
Q  96 aaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    |||||||||  |||||||||||||||| |||||||||||||    
T  37850664 aaaccttaaaacattaggtttatgggttctcttacttataa 37850704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 41759597 - 41759537
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||||||||||||| | | ||||||| || ||||||||||||    
T  41759597 agacaccacactcttacccaaaaccttaaggcaatggatttatggatcatcttacttataa 41759537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 44043816 - 44043876
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | |||||||| |||||| || | |||||||||||| ||||||||||||    
T  44043816 agacaccacactcttacccaaaatcttaagacaatgggtttatgggtcatcttacttataa 44043876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 1735 - 1795
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | ||| |||||||||||||| | |||||||||||||||| ||||||||    
T  1735 agacaccacactcttaccaaaaaccttaaggcaatgggtttatgggtcctctcacttataa 1795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 5471 - 5411
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||||| | | |||||| ||||||||| | |||||||||||||||||||||||||    
T  5471 agacaccacactcttatccaaaatcttaaggcaatgggtttatgggtcctcttacttataa 5411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 5867 - 5831
Alignment:
Q  100 cttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||||||| | |||||||||||||||||||||||||    
T  5867 cttaaggcaatgggtttatgggtcctcttacttataa 5831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 47474 - 47414
Alignment:
Q  76 agacatcacactttaacccaaaaccttaaggcattaggtttatgggtcctcttacttataa 136  Q
    ||||| |||| ||| ||||||||| |||||||| | ||||||||| | |||||||||||||    
T  47474 agacaccacatttttacccaaaactttaaggcaatgggtttatggattctcttacttataa 47414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University