View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_389 (Length: 249)

Name: NF11453A_low_389
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_389
NF11453A_low_389
[»] scaffold0055 (15 HSPs)
scaffold0055 (1-132)||(4610-4741)
scaffold0055 (1-132)||(41692-41823)
scaffold0055 (1-132)||(50940-51071)
scaffold0055 (1-132)||(66563-66694)
scaffold0055 (1-132)||(69395-69526)
scaffold0055 (1-132)||(71562-71693)
scaffold0055 (1-132)||(79941-80072)
scaffold0055 (124-248)||(41976-42100)
scaffold0055 (124-248)||(51224-51348)
scaffold0055 (124-248)||(80225-80349)
scaffold0055 (1-132)||(32378-32509)
scaffold0055 (124-248)||(69679-69803)
scaffold0055 (142-248)||(66777-66883)
scaffold0055 (124-248)||(32662-32792)
scaffold0055 (142-248)||(4421-4527)
[»] scaffold0052 (14 HSPs)
scaffold0052 (1-132)||(6295-6426)
scaffold0052 (1-132)||(25465-25596)
scaffold0052 (1-132)||(27327-27458)
scaffold0052 (1-132)||(35234-35365)
scaffold0052 (1-132)||(47847-47978)
scaffold0052 (1-132)||(79794-79925)
scaffold0052 (124-248)||(25749-25873)
scaffold0052 (124-248)||(48131-48255)
scaffold0052 (1-132)||(63556-63687)
scaffold0052 (124-248)||(6579-6703)
scaffold0052 (142-248)||(27541-27647)
scaffold0052 (124-248)||(63273-63403)
scaffold0052 (142-248)||(80008-80114)
scaffold0052 (163-248)||(50763-50847)
[»] scaffold0021 (2 HSPs)
scaffold0021 (1-132)||(46109-46240)
scaffold0021 (124-248)||(46393-46517)
[»] chr2 (1 HSPs)
chr2 (1-132)||(13643721-13643850)


Alignment Details
Target: scaffold0055 (Bit Score: 128; Significance: 3e-66; HSPs: 15)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 4610 - 4741
Alignment:
Q  1 gctgaaacttaaaggaattgacggaagggccccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagacatagta 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4610 gctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagacatagta 4709  T
Q  101 aggattgacagactgagagctctttcttgatt 132  Q
    ||||||||||||||||||||||||||||||||    
T  4710 aggattgacagactgagagctctttcttgatt 4741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 41823 - 41692
Alignment:
Q  1 gctgaaacttaaaggaattgacggaagggccccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagacatagta 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41823 gctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagacatagta 41724  T
Q  101 aggattgacagactgagagctctttcttgatt 132  Q
    ||||||||||||||||||||||||||||||||    
T  41723 aggattgacagactgagagctctttcttgatt 41692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 51071 - 50940
Alignment:
Q  1 gctgaaacttaaaggaattgacggaagggccccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagacatagta 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51071 gctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagacatagta 50972  T
Q  101 aggattgacagactgagagctctttcttgatt 132  Q
    ||||||||||||||||||||||||||||||||    
T  50971 aggattgacagactgagagctctttcttgatt 50940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 66694 - 66563
Alignment:
Q  1 gctgaaacttaaaggaattgacggaagggccccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagacatagta 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  66694 gctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagacatagta 66595  T
Q  101 aggattgacagactgagagctctttcttgatt 132  Q
    ||||||||||||||||||||||||||||||||    
T  66594 aggattgacagactgagagctctttcttgatt 66563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 69526 - 69395
Alignment:
Q  1 gctgaaacttaaaggaattgacggaagggccccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagacatagta 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  69526 gctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagacatagta 69427  T
Q  101 aggattgacagactgagagctctttcttgatt 132  Q
    ||||||||||||||||||||||||||||||||    
T  69426 aggattgacagactgagagctctttcttgatt 69395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 71562 - 71693
Alignment:
Q  1 gctgaaacttaaaggaattgacggaagggccccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagacatagta 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  71562 gctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagacatagta 71661  T
Q  101 aggattgacagactgagagctctttcttgatt 132  Q
    ||||||||||||||||||||||||||||||||    
T  71662 aggattgacagactgagagctctttcttgatt 71693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #7
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 80072 - 79941
Alignment:
Q  1 gctgaaacttaaaggaattgacggaagggccccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagacatagta 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  80072 gctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagacatagta 79973  T
Q  101 aggattgacagactgagagctctttcttgatt 132  Q
    ||||||||||||||||||||||||||||||||    
T  79972 aggattgacagactgagagctctttcttgatt 79941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 124 - 248
Target Start/End: Original strand, 41976 - 42100
Alignment:
Q  124 ttcttgattaatgaaaacatccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacgaatgccccc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41976 ttcttgattaatgaaaacatccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacgaatgccccc 42075  T
Q  224 gactgtcactgttaatcattgctcc 248  Q
    ||||||| |||||||||||| ||||    
T  42076 gactgtccctgttaatcattactcc 42100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 124 - 248
Target Start/End: Original strand, 51224 - 51348
Alignment:
Q  124 ttcttgattaatgaaaacatccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacgaatgccccc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51224 ttcttgattaatgaaaacatccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacgaatgccccc 51323  T
Q  224 gactgtcactgttaatcattgctcc 248  Q
    ||||||| |||||||||||| ||||    
T  51324 gactgtccctgttaatcattactcc 51348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #10
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 124 - 248
Target Start/End: Original strand, 80225 - 80349
Alignment:
Q  124 ttcttgattaatgaaaacatccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacgaatgccccc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  80225 ttcttgattaatgaaaacatccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacgaatgccccc 80324  T
Q  224 gactgtcactgttaatcattgctcc 248  Q
    ||||||| |||||||||||| ||||    
T  80325 gactgtccctgttaatcattactcc 80349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #11
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 32509 - 32378
Alignment:
Q  1 gctgaaacttaaaggaattgacggaagggccccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagacatagta 100  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32509 gctgaaacttaaaggaattgacggaaaggcaccaccaggagtggagcctgcggcttaatttgactcaacaaggggaaacttaccaggtccagacatagta 32410  T
Q  101 aggattgacagactgagagctctttcttgatt 132  Q
    |||||||||||| |||||||||||||||||||    
T  32409 aggattgacagattgagagctctttcttgatt 32378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #12
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 124 - 248
Target Start/End: Original strand, 69679 - 69803
Alignment:
Q  124 ttcttgattaatgaaaacatccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacgaatgccccc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  69679 ttcttgattaatgaaaacatccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctaactatgaaatacgaatgccccc 69778  T
Q  224 gactgtcactgttaatcattgctcc 248  Q
    ||||||| |||||||||||| ||||    
T  69779 gactgtccctgttaatcattactcc 69803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #13
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 142 - 248
Target Start/End: Original strand, 66777 - 66883
Alignment:
Q  142 atccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacgaatgcccccgactgtcactgttaatca 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  66777 atccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacgaatgcccccgactgtccctgttaatca 66876  T
Q  242 ttgctcc 248  Q
    || ||||    
T  66877 ttactcc 66883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #14
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 124 - 248
Target Start/End: Original strand, 32662 - 32792
Alignment:
Q  124 ttcttgattaatgaaaacatccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaata------cgaat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      | |||    
T  32662 ttcttgattaatgaaaacatccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacaaatgccaat 32761  T
Q  218 gcccccgactgtcactgttaatcattgctcc 248  Q
    ||||||||||||| |||||||||||| ||||    
T  32762 gcccccgactgtcgctgttaatcattactcc 32792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #15
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 142 - 248
Target Start/End: Complemental strand, 4527 - 4421
Alignment:
Q  142 atccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacgaatgcccccgactgtcactgttaatca 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  4527 atccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacaaatgcccccgactgtccctgttaatca 4428  T
Q  242 ttgctcc 248  Q
    || ||||    
T  4427 ttactcc 4421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 128; Significance: 3e-66; HSPs: 14)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 6426 - 6295
Alignment:
Q  1 gctgaaacttaaaggaattgacggaagggccccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagacatagta 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6426 gctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagacatagta 6327  T
Q  101 aggattgacagactgagagctctttcttgatt 132  Q
    ||||||||||||||||||||||||||||||||    
T  6326 aggattgacagactgagagctctttcttgatt 6295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 25596 - 25465
Alignment:
Q  1 gctgaaacttaaaggaattgacggaagggccccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagacatagta 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25596 gctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagacatagta 25497  T
Q  101 aggattgacagactgagagctctttcttgatt 132  Q
    ||||||||||||||||||||||||||||||||    
T  25496 aggattgacagactgagagctctttcttgatt 25465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 27458 - 27327
Alignment:
Q  1 gctgaaacttaaaggaattgacggaagggccccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagacatagta 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27458 gctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagacatagta 27359  T
Q  101 aggattgacagactgagagctctttcttgatt 132  Q
    ||||||||||||||||||||||||||||||||    
T  27358 aggattgacagactgagagctctttcttgatt 27327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 35234 - 35365
Alignment:
Q  1 gctgaaacttaaaggaattgacggaagggccccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagacatagta 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35234 gctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagacatagta 35333  T
Q  101 aggattgacagactgagagctctttcttgatt 132  Q
    ||||||||||||||||||||||||||||||||    
T  35334 aggattgacagactgagagctctttcttgatt 35365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 47978 - 47847
Alignment:
Q  1 gctgaaacttaaaggaattgacggaagggccccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagacatagta 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47978 gctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagacatagta 47879  T
Q  101 aggattgacagactgagagctctttcttgatt 132  Q
    ||||||||||||||||||||||||||||||||    
T  47878 aggattgacagactgagagctctttcttgatt 47847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 79925 - 79794
Alignment:
Q  1 gctgaaacttaaaggaattgacggaagggccccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagacatagta 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  79925 gctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagacatagta 79826  T
Q  101 aggattgacagactgagagctctttcttgatt 132  Q
    ||||||||||||||||||||||||||||||||    
T  79825 aggattgacagactgagagctctttcttgatt 79794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 124 - 248
Target Start/End: Original strand, 25749 - 25873
Alignment:
Q  124 ttcttgattaatgaaaacatccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacgaatgccccc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25749 ttcttgattaatgaaaacatccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacgaatgccccc 25848  T
Q  224 gactgtcactgttaatcattgctcc 248  Q
    ||||||| |||||||||||| ||||    
T  25849 gactgtccctgttaatcattactcc 25873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 124 - 248
Target Start/End: Original strand, 48131 - 48255
Alignment:
Q  124 ttcttgattaatgaaaacatccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacgaatgccccc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48131 ttcttgattaatgaaaacatccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacgaatgccccc 48230  T
Q  224 gactgtcactgttaatcattgctcc 248  Q
    ||||||| |||||||||||| ||||    
T  48231 gactgtccctgttaatcattactcc 48255  T

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Target: scaffold0052; HSP #9
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 63556 - 63687
Alignment:
Q  1 gctgaaacttaaaggaattgacggaagggccccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagacatagta 100  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  63556 gctgaaacttaaaggaattgacggaaaggcaccaccaggagtggagcctgcggcttaatttgactcaacaaggggaaacttaccaggtccagacatagta 63655  T
Q  101 aggattgacagactgagagctctttcttgatt 132  Q
    |||||||||||| |||||||||||||||||||    
T  63656 aggattgacagattgagagctctttcttgatt 63687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #10
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 124 - 248
Target Start/End: Original strand, 6579 - 6703
Alignment:
Q  124 ttcttgattaatgaaaacatccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacgaatgccccc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6579 ttcttgattaatgaaaacatccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctaactatgaaatacgaatgccccc 6678  T
Q  224 gactgtcactgttaatcattgctcc 248  Q
    ||||||| |||||||||||| ||||    
T  6679 gactgtccctgttaatcattactcc 6703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #11
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 142 - 248
Target Start/End: Original strand, 27541 - 27647
Alignment:
Q  142 atccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacgaatgcccccgactgtcactgttaatca 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27541 atccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacgaatgcccccgactgtccctgttaatca 27640  T
Q  242 ttgctcc 248  Q
    || ||||    
T  27641 ttactcc 27647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #12
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 124 - 248
Target Start/End: Complemental strand, 63403 - 63273
Alignment:
Q  124 ttcttgattaatgaaaacatccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaata------cgaat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      | |||    
T  63403 ttcttgattaatgaaaacatccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacaaatgccaat 63304  T
Q  218 gcccccgactgtcactgttaatcattgctcc 248  Q
    ||||||||||||| |||||||||||| ||||    
T  63303 gcccccgactgtcgctgttaatcattactcc 63273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #13
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 142 - 248
Target Start/End: Original strand, 80008 - 80114
Alignment:
Q  142 atccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacgaatgcccccgactgtcactgttaatca 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  80008 atccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacaaatgcccccgactgtccctgttaatca 80107  T
Q  242 ttgctcc 248  Q
    || ||||    
T  80108 ttactcc 80114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 50763 - 50847
Alignment:
Q  163 agttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacgaatgcccccgactgtcactgttaatcattgctcc 248  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  50763 agttgttcgtctttc-taaatccaagaatttcacctctgactatgaaatacgaatgcccccgactgtccctgttaatcattactcc 50847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 46240 - 46109
Alignment:
Q  1 gctgaaacttaaaggaattgacggaagggccccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagacatagta 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46240 gctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagacatagta 46141  T
Q  101 aggattgacagactgagagctctttcttgatt 132  Q
    ||||||||||||||||||||||||||||||||    
T  46140 aggattgacagactgagagctctttcttgatt 46109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 124 - 248
Target Start/End: Original strand, 46393 - 46517
Alignment:
Q  124 ttcttgattaatgaaaacatccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacgaatgccccc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46393 ttcttgattaatgaaaacatccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacgaatgccccc 46492  T
Q  224 gactgtcactgttaatcattgctcc 248  Q
    ||||||| |||||||||||| ||||    
T  46493 gactgtccctgttaatcattactcc 46517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 13643850 - 13643721
Alignment:
Q  1 gctgaaacttaaaggaattgacggaagggccccaccaggagtggagcctgcggcttaatttgactcaacacggggaaacttaccaggtccagacatagta 100  Q
    |||||||| || |||||||||||||||||| || ||| ||||||||||| |||| |||||||||||||||| |||||||||| || |||  | || ||||    
T  13643850 gctgaaacatagaggaattgacggaagggcacctccatgagtggagcctacggcgtaatttgactcaacacagggaaacttatcaagtc--ggcacagta 13643753  T
Q  101 aggattgacagactgagagctctttcttgatt 132  Q
    |||||||||| |||||||||||||||||||||    
T  13643752 aggattgacaaactgagagctctttcttgatt 13643721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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