View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_39 (Length: 441)
Name: NF11453A_low_39
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 6 - 436
Target Start/End: Original strand, 34144437 - 34144867
Alignment:
| Q |
6 |
tttggtgttcctcctgcatcaagtgagccactgctgcatctacttctctttttcctctttcttttatcagaaaaatcaatcctttcacacatagactggt |
105 |
Q |
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| T |
34144437 |
tttggtgttcctcctgcatcaagtgagccactgctgcatctacttctctttttcctctttcttttgtcagaaaaatcaatcctttcacacatagactggt |
34144536 |
T |
|
| Q |
106 |
catagatcttgacatcaaatttatacttgttaatgcagttgaatacaagcaaatctccaatttcaagcttgtgagccgatgagaaataaccccatccttt |
205 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
34144537 |
catagatcttgacatcaaagttatacttgttaatgcagttgaatacaagcaaatctccaatttcaagcttgtgagccgatgagaaatcatcccatccttt |
34144636 |
T |
|
| Q |
206 |
cttaaaagcaaaagaaccatcaacttctgaaattgttataacccatctcttaccggttgaatcctcgagattgattttctgatcaaccaacaatgacata |
305 |
Q |
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|||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34144637 |
cttaaaagcaaaagaaccatcaacttctgatactgttatagcccatctcttaccggttgaatcctcaagattgattttctgatcaaccaacaatgacata |
34144736 |
T |
|
| Q |
306 |
gtaggatttaacttagaaggaagatcctgcagtcagtttaaaaagatgttaaaaatatgcagcatcatcataaatacaaactcaaaaatagattcacatt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34144737 |
gtaggatttaacttagaaggaagatcctgcagtcagtttaaaaagatgttaaaaatatgcagcatcatcataaatacaaactcaaaaacagattcacatt |
34144836 |
T |
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| Q |
406 |
ttgcaagaagatctgtaacatgcatgttctt |
436 |
Q |
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| T |
34144837 |
ttgcaagaagatctgtaacatgcatgttctt |
34144867 |
T |
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