View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_390 (Length: 249)
Name: NF11453A_low_390
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_390 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 41223007 - 41223246
Alignment:
| Q |
1 |
gttcaagcttacctcaattattaactccactagaagctccttcattaatggatattgaaaatgcttgggaccatttcctcttttatgatgccggtacaat |
100 |
Q |
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| T |
41223007 |
gttcaagcttacctcaattattaactccactagtagctccttcattgatggatattgaaaatgcttcggaccatttcctcttttcagatgccggtacaac |
41223106 |
T |
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| Q |
101 |
agaatcatcgagtatagggttccagaagcctctaggatcagacaaaacccagcttacttttgttggtggtcttgctaagttatggatggaacctttatcg |
200 |
Q |
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| T |
41223107 |
agaatcatcgaggaaagggttccagaagcctctaggatcagacaaaacccagctcacttttgttggtggtcttgctaagttatggatggaacctctatcg |
41223206 |
T |
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| Q |
201 |
tcttcccctattttgattttcttctgagaatcatattctt |
240 |
Q |
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| T |
41223207 |
tcttcccctattttgattttcttctgagaatcattttctt |
41223246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 16234013 - 16233771
Alignment:
| Q |
1 |
gttcaagcttacctcaattattaactccactagaagctccttcattaatggatattgaaaatgcttgggaccatttcctcttttat-gatgccggtacaa |
99 |
Q |
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| T |
16234013 |
gttcaagcttacctcaattattaactccacaagtagctccttcattgatggatattgaaaatgcttgggaccatttcctcttttccagatgccggtacaa |
16233914 |
T |
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| Q |
100 |
tagaatcatcgagtatagggttccagaagcctctaggatcagacaaaacccagcttacttttgttggtggtcttgctaagttatggatggaacctttatc |
199 |
Q |
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| T |
16233913 |
tagaatcatcgaggatagggttccagaagcctctaggatcagacaaaacccagcttacttttgttggtagtcttgctaagttatggatggaatctttatc |
16233814 |
T |
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| Q |
200 |
gtcttcccctattttgattttcttctgagaatcatattcttcg |
242 |
Q |
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| T |
16233813 |
ggcttcccctattttgattttcttctgagaatcattttcttcg |
16233771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 37 - 232
Target Start/End: Original strand, 41217262 - 41217458
Alignment:
| Q |
37 |
ctccttcattaatggatattgaaaa-tgcttgggaccatttcctcttttatgatgccggtacaatagaatcatcgagtatagggttccagaagcctctag |
135 |
Q |
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| T |
41217262 |
ctccttcattgaaggatattgaaaaatgtttcgttccatttcgtcttttcagatgttggtacaatagaatcatctaggaaagggctccagaagccaccag |
41217361 |
T |
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| Q |
136 |
gatcagacaaaacccagcttacttttgttggtggtcttgctaagttatggatggaacctttatcgtcttcccctattttgattttcttctgagaatc |
232 |
Q |
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| T |
41217362 |
gaccagacaaaacccagcttacttttgttggtggttttgttaagttatggatggaacctccgtcgtcttcccccgttttgattttcttctgagaatc |
41217458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 9 - 234
Target Start/End: Complemental strand, 1598644 - 1598413
Alignment:
| Q |
9 |
ttacctcaattattaactccactagaagctccttc------attaatggatattgaaaatgcttgggaccatttcctcttttatgatgccggtacaatag |
102 |
Q |
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||||||||| ||| ||||||||||| ||||||||| ||| |||||||| |||||||||| ||||||||||||||||| ||||| ||||||||| |
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| T |
1598644 |
ttacctcaactataaactccactagtagctccttcgaattcattgatggatatcgaaaatgcttcggaccatttcctcttttcagatgctggtacaatat |
1598545 |
T |
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| Q |
103 |
aatcatcgagtatagggttccagaagcctctaggatcagacaaaacccagcttacttttgttggtggtcttgctaagttatggatggaacctttatcgtc |
202 |
Q |
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||||||| || | ||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||| |
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| T |
1598544 |
aatcatctaggaaagggttccagaagccctcgggactagacaaaacccagcttacttttgttggtggttttgttaagttatggatggaacctctatcgtc |
1598445 |
T |
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| Q |
203 |
ttcccctattttgattttcttctgagaatcat |
234 |
Q |
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|||||| |||||||||||||||||||||||| |
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| T |
1598444 |
ttcccccgttttgattttcttctgagaatcat |
1598413 |
T |
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