View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_393 (Length: 249)
Name: NF11453A_low_393
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_393 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 7090017 - 7089792
Alignment:
| Q |
19 |
taatttacctcccgagttactattagacataattcaaagggtggaagctagtgaaacctcttggccatctcgccgcgcacttgtagcttgtgcctcagtt |
118 |
Q |
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| T |
7090017 |
taatttacctcccgagttactattagacataattcaaagggtggaagctagtgaaacctcttggccatctcgccgtgcacttgtagcttgtgcctcagtt |
7089918 |
T |
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| Q |
119 |
tgtagcttatggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccctatatcactgaagcaggtaannnnnnnnn |
218 |
Q |
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| T |
7089917 |
tgtagattatggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccctatatcactgaagcaggtaatttttt--- |
7089821 |
T |
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| Q |
219 |
ncttttcactttatttatgtatttgatttga |
249 |
Q |
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| T |
7089820 |
--ttttcactttatttatgtatttgatttga |
7089792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 23 - 209
Target Start/End: Complemental strand, 7669839 - 7669653
Alignment:
| Q |
23 |
ttacctcccgagttactattagacataattcaaagggtggaagctagtgaaacctcttggccatctcgccgcgcacttgtagcttgtgcctcagtttgta |
122 |
Q |
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| T |
7669839 |
ttacctcctgagttactattagacataattcaaagggtggaagctagtgaaaccacttggccatctctccgcgcacttgtagcttgtgcctcagtttgta |
7669740 |
T |
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| Q |
123 |
gcttatggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccctatatcactgaagcaggtaa |
209 |
Q |
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| T |
7669739 |
gattgtggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccctatatcattgaagcaggtaa |
7669653 |
T |
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