View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453A_low_399 (Length: 248)
Name: NF11453A_low_399
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_399 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 7779408 - 7779307
Alignment:
| Q |
1 |
aaacaccaacaaggttttggcgttgttgttgggggttcttgatatttcgacaaagtaatcaatagagtttattttgtcaataattaggctaggttaggta |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| || ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7779408 |
aaacaccaacaaatttttggcgttgttgttggggattgttgatatttcgacaaggtaatcaatagaatttattttgtcaataattaggctaggttaggta |
7779309 |
T |
|
| Q |
101 |
ag |
102 |
Q |
| |
|
|| |
|
|
| T |
7779308 |
ag |
7779307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 7779214 - 7779169
Alignment:
| Q |
196 |
cacgtccttctatcctcacttttaattgtgttaacacatagctccc |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7779214 |
cacgtccttctatcctcacttttaattgtgttaacaaatagctccc |
7779169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 25664777 - 25664714
Alignment:
| Q |
39 |
ttgatatttcgacaaagtaatcaatagagtttattttgtcaataattaggctaggttaggtaag |
102 |
Q |
| |
|
||||||||||||||| |||||| |||| |||||||||| ||||||||| ||||||||||||| |
|
|
| T |
25664777 |
ttgatatttcgacaaggtaatcggtagaatttattttgtgaataattagcttaggttaggtaag |
25664714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 25132602 - 25132538
Alignment:
| Q |
39 |
ttgatatttcgacaaagtaatcaatagagtttatttt-gtcaataattaggctaggttaggtaag |
102 |
Q |
| |
|
|||||||||| |||| ||||||| |||| |||||||| || ||||||||| ||||||||||||| |
|
|
| T |
25132602 |
ttgatatttcaacaaggtaatcagtagaatttatttttgtgaataattagtttaggttaggtaag |
25132538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 13581803 - 13581725
Alignment:
| Q |
10 |
caaggttttggcgttgttgttgggggttcttgatatttcgacaaagtaatcaatagagtttattttgtcaataattagg |
88 |
Q |
| |
|
|||| ||||| || |||||| ||| || |||||||||||| || ||||||||||| |||||||||| |||||||||| |
|
|
| T |
13581803 |
caagtttttgacgctgttgtccgggattgttgatatttcgaaaagttaatcaatagaatttattttgtgaataattagg |
13581725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University