View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453A_low_4 (Length: 583)
Name: NF11453A_low_4
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_4 |
 | |
|
| [»] chr7 (6 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 489; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 75 - 583
Target Start/End: Complemental strand, 33966193 - 33965686
Alignment:
| Q |
75 |
ttagacgacgagaattggcttccttgataatctgaatagagctaaaatcaccttctaagcattcttggtacatagccactagttgatcacaaacctacaa |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33966193 |
ttagacgacgagaattggcttccttgataatctgaatagagctaaaatcaccttctaagcattcttggtacatagccactagttgatcacaaacctacaa |
33966094 |
T |
|
| Q |
175 |
agatagatacatacttaaaagtgaagattgatgaataaaaaatgataattaaagcaatagaaatagtaaaagaaatgacctcttcagtgctgttatcaag |
274 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33966093 |
agatagatacatgcttaaaagtgaagattgatgaataaaaaatgataattaaagcaatagaaatagtaaaagaaatgacctcttcagtgctgttatcaag |
33965994 |
T |
|
| Q |
275 |
aggatgtccagcaaaagaagtaagtaggtccttgagtgcaatttttaccaaaggaatacaaagtagctggtctttggattgaatgaaacaagaaaaaagg |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33965993 |
aggatgtccagcaaaagaagtaagtaggtccttgagtgcaatttttaccaaaggaatacaaagtagctggtctttggattgaatggaacaagaaaaaagg |
33965894 |
T |
|
| Q |
375 |
cggtcacaaaagcggtaaagccttaactcaggctgagggccaccgcatccgaatttaacataggctcgaatcggccaccaggaattgataaccaaacaaa |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33965893 |
cggtcacaaaagcggtaaagccttaactcaggctgagggccaccgcctccgaatttaacataggctcgaatcggcca-caggaattgataaccaaacaaa |
33965795 |
T |
|
| Q |
475 |
tcccctccctgaatacttccattgactttccttggccttgcaccaccgctctagaaccaaacaaagcattcatagccaaactcatccctctgtagtatac |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33965794 |
tcccctccctgaatacttccattgactttccttggccttgcaccaccgctctagaaccaaacaaagcattcatagccaaactcatccctctgtagtatac |
33965695 |
T |
|
| Q |
575 |
tttcattga |
583 |
Q |
| |
|
||||||||| |
|
|
| T |
33965694 |
tttcattga |
33965686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 33966399 - 33966342
Alignment:
| Q |
20 |
cttctgtgttagaaggcgagtttggctaagattagctttcttgattttctttttctta |
77 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33966399 |
cttctgtgttagaaggcgagtttggctaagattagctttcttgattttctttttctta |
33966342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 91 - 175
Target Start/End: Original strand, 33433347 - 33433431
Alignment:
| Q |
91 |
ggcttccttgataatctgaatagagctaaaatcaccttctaagcattcttggtacatagccactagttgatcacaaacctacaaa |
175 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||| || |||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
33433347 |
ggcttccttgagaatctgaacagagctaaaatcatgttgtaagcattcttggtacatagagactagttgatcacacacctacaaa |
33433431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 33112070 - 33112009
Alignment:
| Q |
112 |
agagctaaaatcaccttctaagcattcttggtacatagccactagttgatcacaaacctaca |
173 |
Q |
| |
|
|||||||||||| |||| ||||||||||| |||||| ||| |||||| ||||||||||||| |
|
|
| T |
33112070 |
agagctaaaatctccttgtaagcattcttcgtacattaccaatagttgttcacaaacctaca |
33112009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 344 - 380
Target Start/End: Complemental strand, 33970286 - 33970250
Alignment:
| Q |
344 |
gtctttggattgaatgaaacaagaaaaaaggcggtca |
380 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
33970286 |
gtctttggatggaaagaaacaagaaaaaaggcggtca |
33970250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 505
Target Start/End: Complemental strand, 44945398 - 44945350
Alignment:
| Q |
457 |
aattgataaccaaacaaatcccctccctgaatacttccattgactttcc |
505 |
Q |
| |
|
|||| ||| ||||||||||||| || |||||||||||||||| |||||| |
|
|
| T |
44945398 |
aatttatagccaaacaaatcccttctctgaatacttccattggctttcc |
44945350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University