View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_401 (Length: 248)
Name: NF11453A_low_401
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_401 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 35557909 - 35558130
Alignment:
| Q |
19 |
aaaagaatcaataataatcaagtaaaattttcaatatcagtcagatccaatagagattgtagcactagaaatgctaccatgactactactatcacaaaga |
118 |
Q |
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| T |
35557909 |
aaaagaatcaataataatcaagtaaaattttcaatatcagtcagatccaatagagattgtagcactagaaatgctaccatgactactactatcacaaaga |
35558008 |
T |
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| Q |
119 |
gtgaaagcacgttccaaattagccacaatatcacttattgttggcctatcttttccttccaaatgcacacaatgcattgcagtatatgacacaagctcca |
218 |
Q |
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| T |
35558009 |
gtgaaagcacgttccaaattagccacaatatcacttattgttggtctatcttttccttccaaatgcacacaatgcattgcagtatatgacacaagctcca |
35558108 |
T |
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| Q |
219 |
ctgcttctgtttcattcatctc |
240 |
Q |
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|||||||||||||||||||||| |
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| T |
35558109 |
ctgcttctgtttcattcatctc |
35558130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 35555322 - 35555394
Alignment:
| Q |
142 |
cacaatatcacttattgttggcctatcttttccttccaaatgcacacaatgcattgcagtatatgacacaagc |
214 |
Q |
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| T |
35555322 |
cacaatgtcacttattgttggtctatcttttccttccaaatgcacacaatgcattgcagtatatgacacaagc |
35555394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 35555251 - 35555320
Alignment:
| Q |
21 |
aagaatcaataataatcaagtaaaattttcaatatcagtcagatccaatagagattgtagcactagaaatgc |
92 |
Q |
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| T |
35555251 |
aagaatcgataaaaatca--taacattatcaatgtcagtcagatccaatcgagattgtaacacaagaaatgc |
35555320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 31754808 - 31754870
Alignment:
| Q |
130 |
ttccaaattagccacaatatcacttattgttggcctatcttttccttccaaatgcacacaatg |
192 |
Q |
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| T |
31754808 |
ttccaaattagccacaatatcagccatagttggtctatctttcccttccaaattcacacaatg |
31754870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 25739918 - 25739961
Alignment:
| Q |
161 |
ggcctatcttttccttccaaatgcacacaatgcattgcagtata |
204 |
Q |
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| T |
25739918 |
ggcctttcttttccttccaaattcacacaatgcatagcagtata |
25739961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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