View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_402 (Length: 248)
Name: NF11453A_low_402
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_402 |
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Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 116 - 244
Target Start/End: Original strand, 4365314 - 4365442
Alignment:
| Q |
116 |
tatacaattcaatacataaaaggacaaagccgtccaaattcacatagaatttacatttagacaatcatatctatcattcaataccttatagaaaggtata |
215 |
Q |
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| T |
4365314 |
tatataattcaatacataaaaggacaaagccgtccaaattcacatagaatttacatttagacaatcatatctatcattgaataccttatagaaaggtata |
4365413 |
T |
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| Q |
216 |
aaacataaaactatatatagaataatata |
244 |
Q |
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| T |
4365414 |
aaacataaaactatatatagaatactata |
4365442 |
T |
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Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 31 - 176
Target Start/End: Original strand, 33652146 - 33652296
Alignment:
| Q |
31 |
atatacataagaaacattcatatgcaaggtatgcctttaatcctcaatttcaactaataaactttaacatttcactaatatagcttatacaattcaatac |
130 |
Q |
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| T |
33652146 |
atatacataagaaacattcatacgcaaggtatgtctttaatcctcaatttcaactaataacctttaatatttcattacatgaacttatacaattcgatac |
33652245 |
T |
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| Q |
131 |
ataaaaggacaa-----agccgtccaaattcacatagaatttacatttaga |
176 |
Q |
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| T |
33652246 |
ttaaaaggacaagacaaagcattctaaattcacatagaatttatatttaga |
33652296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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