View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_403 (Length: 248)
Name: NF11453A_low_403
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_403 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 2134041 - 2133819
Alignment:
| Q |
14 |
agatattactaatcaatggaaaacactgaagagcaagagttgttgtgattcacatatcatactactcaataattcataaacctacgatactacctcttag |
113 |
Q |
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| T |
2134041 |
agatattactaatcaatggaaaacacttaagagcaagagttgttgtgattcacatatcatactactcaataattcataaacctacgatactacctcttag |
2133942 |
T |
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| Q |
114 |
tcttagtaataaggtgtaccaagttttttaatttgtcaagaaatgagaaaagaatatagagttggggtcatttgggaatttgtattagctagttttattt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
2133941 |
tcttagtaataaggtgtaccaagttttttaatttgtcaagaaatgagaaaagaatatagagttggggtcatttgggaa-ttgtattagctagttt--ttt |
2133845 |
T |
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| Q |
214 |
atttattttgttcactttatattctt |
239 |
Q |
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||||||||||| ||||||| ||||| |
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| T |
2133844 |
ttttattttgtttactttattttctt |
2133819 |
T |
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