View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_405 (Length: 247)
Name: NF11453A_low_405
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_405 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 26722779 - 26723007
Alignment:
| Q |
8 |
tgagatgaaaccacatatgatgttatcttttgatttttgttaagttaatttatgaacaaatatataaatattttggtgcatacgatgcatatacttaaga |
107 |
Q |
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| T |
26722779 |
tgagaagaaaccacatatgaagttatcttttgatttttggtaagttaatttatgaacaaatatataaatattttggtgcatacgatgcatatactcacga |
26722878 |
T |
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| Q |
108 |
tctaatttatttttgaagatgttggcatatgagggattttgtcaatcaatcttggacaagaaagctactgcagtagtcttggtcgacgattacggcaaca |
207 |
Q |
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| T |
26722879 |
tctaatttatttttgaagatgttggcatat----gattttgtcaatcaatcttggacaagaaagctactgcagtagtcttggtcgatgattatggcaaca |
26722974 |
T |
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| Q |
208 |
ggtgtaggattgcatacttatttatgcatcaag |
240 |
Q |
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| T |
26722975 |
tgtgtgggattgcatacttatttatgcatcaag |
26723007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 26837845 - 26837708
Alignment:
| Q |
25 |
tgatgttatcttttgatttttgttaagttaatttatgaacaaatatataaatattttggtgcatacgatgcatatacttaagatctaatttatttttgaa |
124 |
Q |
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||||||||||||| ||||||| | || ||||| || |||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||| |
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| T |
26837845 |
tgatgttatctttgaatttttgatgagctaattcataaacaaatatataaatattttggtgcatacgatgcatattctcactttctaatttatttttgaa |
26837746 |
T |
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| Q |
125 |
gatgttggcatatgagggattttgtcaatcaatcttgg |
162 |
Q |
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| T |
26837745 |
gatgttggcttatgagggattttgtccatcaaacttgg |
26837708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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