View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_414 (Length: 246)
Name: NF11453A_low_414
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_414 |
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| [»] scaffold0581 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 25616648 - 25616412
Alignment:
| Q |
1 |
aaatcctgatgattaactccgatacatggattgttcttaaacatactcttaattaatttcagtatctatttcaatctgagcatatatataacagataaca |
100 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25616648 |
aaatcctgataactaactccgatacatggattgttcttaaacatactcttaattaatttcagtatctatttcaatctgagcatatatataacagataaca |
25616549 |
T |
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| Q |
101 |
tatatttgttatatcagtctactaaaataacagaaagaggagcaggattttttcttggtatacccttctttgtcacaattgtagctaaagtctctgcccn |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25616548 |
tatatttgttatatcagtctactaaaataacagaaagaggagcaggattttttcttggtatacccttctttgtcacaattgtagctaacgtctctgcctt |
25616449 |
T |
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| Q |
201 |
nnnnnnnctaacgcatactctcgagggatatattctt |
237 |
Q |
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||||| |||||||||||||||||| ||||| |
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| T |
25616448 |
ttcttttctaacacatactctcgagggatattttctt |
25616412 |
T |
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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 25611220 - 25611124
Alignment:
| Q |
1 |
aaatcctgatgattaactccgatacatggattgttcttaaacatactcttaattaatttcagtatctatttcaatctgagcatatatataacagataa |
98 |
Q |
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||||||| || | ||||||| ||| |||||||||| |||| |||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
25611220 |
aaatcctaataactaactccaatatatggattgttgttaagcatact-ttaattaatctcagtatctatttcaatctgatcatatatataacagataa |
25611124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0581 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0581
Description:
Target: scaffold0581; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 6267 - 6356
Alignment:
| Q |
1 |
aaatcctgatgattaactccgatacatggattgttcttaaacatactcttaattaatttcagtatctatttcaatctgagcatatatata |
90 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6267 |
aaatcctgataattaactccgatacatggattgttcttaaacatactcttaattaatttcagtatctatttcaatctgagcatatatata |
6356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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