View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_417 (Length: 246)

Name: NF11453A_low_417
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_417
NF11453A_low_417
[»] chr3 (44 HSPs)
chr3 (1-231)||(6096129-6096371)
chr3 (72-231)||(36018330-36018489)
chr3 (59-177)||(51398499-51398617)
chr3 (44-231)||(31340570-31340771)
chr3 (72-231)||(43404262-43404433)
chr3 (72-227)||(43402323-43402490)
chr3 (72-231)||(40912805-40912976)
chr3 (44-150)||(29812720-29812827)
chr3 (59-150)||(34490687-34490778)
chr3 (44-208)||(55302517-55302692)
chr3 (44-231)||(4569391-4569590)
chr3 (49-150)||(49200073-49200174)
chr3 (43-150)||(46173173-46173279)
chr3 (44-193)||(54593144-54593305)
chr3 (68-150)||(5236861-5236943)
chr3 (49-150)||(44331851-44331952)
chr3 (69-150)||(5258548-5258630)
chr3 (59-193)||(29810541-29810687)
chr3 (49-150)||(44331232-44331333)
chr3 (69-150)||(7761947-7762028)
chr3 (69-150)||(7764134-7764216)
chr3 (69-150)||(3393289-3393370)
chr3 (72-150)||(40592353-40592431)
chr3 (69-150)||(45094846-45094928)
chr3 (44-150)||(36029530-36029637)
chr3 (49-150)||(16264785-16264887)
chr3 (185-231)||(49200000-49200046)
chr3 (46-111)||(40734156-40734221)
chr3 (46-111)||(40735087-40735152)
chr3 (48-111)||(8370036-8370099)
chr3 (51-110)||(23410774-23410833)
chr3 (44-111)||(27027183-27027250)
chr3 (44-150)||(27038478-27038585)
chr3 (44-150)||(35925927-35926034)
chr3 (69-150)||(9636532-9636614)
chr3 (143-193)||(29812832-29812882)
chr3 (44-150)||(47923445-47923553)
chr3 (44-111)||(21711678-21711745)
chr3 (48-111)||(30709342-30709405)
chr3 (97-150)||(5260727-5260781)
chr3 (143-193)||(30709451-30709501)
chr3 (72-149)||(8127068-8127145)
chr3 (77-110)||(24128212-24128245)
chr3 (143-171)||(34490783-34490811)
[»] scaffold0286 (1 HSPs)
scaffold0286 (49-231)||(11003-11197)
[»] chr4 (49 HSPs)
chr4 (49-231)||(6655401-6655595)
chr4 (71-231)||(2209187-2209347)
chr4 (68-231)||(40630448-40630623)
chr4 (68-231)||(50674375-50674550)
chr4 (59-193)||(26175985-26176119)
chr4 (68-193)||(35661903-35662028)
chr4 (68-208)||(26363729-26363881)
chr4 (41-150)||(54882477-54882586)
chr4 (44-148)||(9927867-9927971)
chr4 (69-177)||(56179001-56179110)
chr4 (59-193)||(12739899-12740034)
chr4 (44-150)||(12745820-12745926)
chr4 (59-193)||(12748105-12748240)
chr4 (77-193)||(34570763-34570891)
chr4 (86-231)||(50263227-50263383)
chr4 (69-177)||(5370452-5370561)
chr4 (63-150)||(52095764-52095852)
chr4 (61-150)||(46570148-46570237)
chr4 (71-150)||(37740311-37740390)
chr4 (72-150)||(41639033-41639111)
chr4 (51-150)||(5429345-5429444)
chr4 (72-150)||(36314812-36314890)
chr4 (72-150)||(36329021-36329099)
chr4 (81-173)||(10047778-10047871)
chr4 (44-150)||(25861585-25861693)
chr4 (72-231)||(27417480-27417651)
chr4 (97-177)||(48142763-48142844)
chr4 (97-150)||(54200310-54200363)
chr4 (44-111)||(16628425-16628492)
chr4 (77-150)||(8689083-8689157)
chr4 (97-149)||(29254205-29254257)
chr4 (143-193)||(5429449-5429499)
chr4 (143-177)||(9927826-9927860)
chr4 (72-150)||(54867616-54867694)
chr4 (78-171)||(55085934-55086027)
chr4 (46-111)||(3778025-3778090)
chr4 (81-150)||(6743006-6743075)
chr4 (59-150)||(5148114-5148206)
chr4 (63-111)||(5396263-5396311)
chr4 (145-193)||(29254265-29254313)
chr4 (97-150)||(30000877-30000931)
chr4 (68-150)||(36994242-36994324)
chr4 (49-150)||(3909760-3909860)
chr4 (72-109)||(48142822-48142859)
chr4 (72-109)||(52083007-52083044)
chr4 (72-109)||(52094014-52094051)
chr4 (59-111)||(13992731-13992783)
chr4 (59-111)||(28468073-28468125)
chr4 (160-208)||(41639133-41639181)
[»] chr7 (40 HSPs)
chr7 (59-233)||(29608207-29608382)
chr7 (59-231)||(6360441-6360625)
chr7 (44-150)||(47674347-47674454)
chr7 (44-150)||(47676540-47676647)
chr7 (94-193)||(31733311-31733410)
chr7 (44-150)||(27347581-27347687)
chr7 (44-150)||(4585819-4585925)
chr7 (43-193)||(14070182-14070345)
chr7 (43-193)||(14380210-14380373)
chr7 (63-150)||(23554716-23554804)
chr7 (59-150)||(18126318-18126408)
chr7 (151-231)||(48599853-48599933)
chr7 (47-150)||(2389735-2389838)
chr7 (44-208)||(32358388-32358564)
chr7 (68-150)||(43863943-43864025)
chr7 (72-150)||(33332032-33332110)
chr7 (77-150)||(4538955-4539028)
chr7 (77-171)||(2361540-2361635)
chr7 (59-150)||(4796238-4796329)
chr7 (69-150)||(4178457-4178539)
chr7 (81-150)||(2647288-2647357)
chr7 (63-150)||(19495646-19495735)
chr7 (97-193)||(2761651-2761759)
chr7 (68-150)||(26416995-26417077)
chr7 (47-150)||(49092127-49092232)
chr7 (59-146)||(48489103-48489190)
chr7 (143-193)||(18126413-18126463)
chr7 (72-150)||(30026404-30026481)
chr7 (97-150)||(1113367-1113420)
chr7 (44-150)||(79826-79933)
chr7 (185-231)||(2389865-2389911)
chr7 (143-193)||(2647362-2647412)
chr7 (143-177)||(4585930-4585964)
chr7 (97-150)||(24515164-24515218)
chr7 (143-193)||(26417082-26417132)
chr7 (143-177)||(27347692-27347726)
chr7 (44-89)||(34311285-34311330)
chr7 (59-116)||(48599934-48599991)
chr7 (59-111)||(21646495-21646547)
chr7 (59-111)||(25767398-25767450)
[»] chr8 (30 HSPs)
chr8 (49-231)||(42435520-42435714)
chr8 (44-150)||(15212443-15212550)
chr8 (49-193)||(43036086-43036242)
chr8 (49-150)||(30143005-30143106)
chr8 (47-150)||(11383449-11383552)
chr8 (59-149)||(27810971-27811061)
chr8 (44-150)||(22975974-22976080)
chr8 (97-231)||(4283039-4283185)
chr8 (63-150)||(4731335-4731422)
chr8 (69-150)||(1746622-1746704)
chr8 (68-150)||(12703043-12703125)
chr8 (49-150)||(4743597-4743699)
chr8 (69-150)||(31217939-31218021)
chr8 (78-150)||(34254732-34254805)
chr8 (68-148)||(40221228-40221308)
chr8 (69-150)||(34256908-34256990)
chr8 (69-150)||(42497897-42497979)
chr8 (63-116)||(4733502-4733555)
chr8 (49-150)||(10014822-10014923)
chr8 (59-150)||(5702048-5702140)
chr8 (69-150)||(19945743-19945825)
chr8 (51-150)||(1345775-1345873)
chr8 (143-177)||(15212555-15212589)
chr8 (97-150)||(17982363-17982417)
chr8 (143-193)||(30143111-30143161)
chr8 (143-193)||(33351919-33351969)
chr8 (185-231)||(40221337-40221383)
chr8 (97-150)||(44303564-44303618)
chr8 (59-103)||(33351844-33351888)
chr8 (143-171)||(40221315-40221343)
[»] scaffold0014 (1 HSPs)
scaffold0014 (44-231)||(80812-81011)
[»] chr1 (30 HSPs)
chr1 (27-231)||(193035-193251)
chr1 (49-229)||(37033600-37033792)
chr1 (59-150)||(11348174-11348265)
chr1 (59-150)||(37879513-37879604)
chr1 (68-150)||(44454841-44454923)
chr1 (71-146)||(10924908-10924983)
chr1 (59-150)||(31658911-31659002)
chr1 (59-146)||(49918022-49918109)
chr1 (69-150)||(20762354-20762436)
chr1 (69-148)||(3189033-3189113)
chr1 (69-148)||(3197850-3197930)
chr1 (69-148)||(3206668-3206748)
chr1 (143-231)||(13547618-13547706)
chr1 (143-231)||(13549529-13549617)
chr1 (45-116)||(28220665-28220737)
chr1 (59-116)||(28223860-28223917)
chr1 (59-150)||(3156540-3156631)
chr1 (185-231)||(37879440-37879486)
chr1 (97-193)||(30476797-30476905)
chr1 (59-193)||(1833194-1833341)
chr1 (97-150)||(13316722-13316776)
chr1 (185-231)||(29135841-29135887)
chr1 (49-149)||(4553053-4553153)
chr1 (98-150)||(29135762-29135814)
chr1 (143-193)||(28223770-28223820)
chr1 (143-173)||(31659007-31659037)
chr1 (97-150)||(13547711-13547763)
chr1 (97-150)||(13549622-13549674)
chr1 (143-171)||(29135819-29135847)
chr1 (44-96)||(29652307-29652359)
[»] chr5 (30 HSPs)
chr5 (59-193)||(42428779-42428913)
chr5 (97-193)||(533492-533588)
chr5 (143-229)||(27015083-27015169)
chr5 (45-150)||(42426639-42426745)
chr5 (143-227)||(38746556-38746640)
chr5 (68-193)||(30683268-30683394)
chr5 (44-150)||(32636481-32636588)
chr5 (72-151)||(38746456-38746535)
chr5 (44-150)||(5057489-5057595)
chr5 (43-150)||(37438802-37438910)
chr5 (72-150)||(13487891-13487967)
chr5 (48-110)||(213006-213068)
chr5 (44-150)||(40146707-40146813)
chr5 (97-150)||(535614-535667)
chr5 (72-150)||(13239438-13239516)
chr5 (141-208)||(5057598-5057665)
chr5 (44-150)||(12083731-12083838)
chr5 (97-150)||(13342771-13342825)
chr5 (143-177)||(13487972-13488006)
chr5 (143-193)||(19806175-19806225)
chr5 (97-150)||(25412472-25412526)
chr5 (97-150)||(19806117-19806170)
chr5 (97-150)||(39468936-39468989)
chr5 (135-191)||(3075976-3076032)
chr5 (44-111)||(11916525-11916592)
chr5 (59-109)||(28751027-28751077)
chr5 (101-150)||(30182302-30182352)
chr5 (124-173)||(15464935-15464984)
chr5 (148-177)||(32636598-32636627)
chr5 (59-150)||(9352903-9352995)
[»] chr2 (27 HSPs)
chr2 (44-177)||(39284554-39284688)
chr2 (63-177)||(29867556-29867671)
chr2 (59-150)||(2837248-2837339)
chr2 (51-150)||(36318413-36318513)
chr2 (63-150)||(36988479-36988567)
chr2 (44-208)||(35447436-35447611)
chr2 (63-170)||(6595378-6595486)
chr2 (44-150)||(33528177-33528284)
chr2 (43-148)||(17863849-17863955)
chr2 (44-110)||(45726464-45726530)
chr2 (63-150)||(34389287-34389375)
chr2 (68-150)||(45099436-45099519)
chr2 (44-150)||(14698563-14698669)
chr2 (72-150)||(20522659-20522737)
chr2 (72-150)||(21630382-21630460)
chr2 (44-149)||(23078025-23078131)
chr2 (44-111)||(13569807-13569874)
chr2 (97-150)||(2334821-2334875)
chr2 (97-150)||(4503536-4503590)
chr2 (44-111)||(8389703-8389768)
chr2 (72-111)||(10706834-10706873)
chr2 (97-150)||(5723658-5723712)
chr2 (81-150)||(17865614-17865684)
chr2 (143-193)||(33118517-33118567)
chr2 (97-150)||(36206069-36206123)
chr2 (72-109)||(2334767-2334804)
chr2 (59-150)||(28258746-28258838)
[»] scaffold0066 (1 HSPs)
scaffold0066 (49-150)||(20819-20920)
[»] chr6 (25 HSPs)
chr6 (71-231)||(3809238-3809407)
chr6 (48-208)||(21593110-21593282)
chr6 (68-150)||(9183414-9183496)
chr6 (59-150)||(22964135-22964226)
chr6 (59-150)||(23824167-23824258)
chr6 (72-149)||(603642-603719)
chr6 (44-150)||(31979954-31980061)
chr6 (68-150)||(5407312-5407395)
chr6 (68-150)||(5411637-5411720)
chr6 (44-111)||(31086025-31086092)
chr6 (77-143)||(17759428-17759494)
chr6 (87-150)||(24714809-24714872)
chr6 (46-150)||(5017050-5017156)
chr6 (77-150)||(26661422-26661495)
chr6 (77-150)||(26767393-26767466)
chr6 (97-150)||(5413852-5413906)
chr6 (72-150)||(5571846-5571924)
chr6 (84-150)||(24435566-24435632)
chr6 (97-150)||(30834941-30834995)
chr6 (97-150)||(33160758-33160812)
chr6 (189-231)||(603568-603610)
chr6 (97-150)||(5406602-5406656)
chr6 (97-150)||(5410927-5410981)
chr6 (97-150)||(16452844-16452898)
chr6 (59-150)||(5757047-5757139)
[»] scaffold0176 (1 HSPs)
scaffold0176 (51-150)||(17668-17767)
[»] scaffold0466 (2 HSPs)
scaffold0466 (143-231)||(6878-6967)
scaffold0466 (44-89)||(6788-6833)
[»] scaffold0002 (1 HSPs)
scaffold0002 (72-150)||(434217-434297)
[»] scaffold0016 (1 HSPs)
scaffold0016 (69-150)||(114269-114350)
[»] scaffold0087 (1 HSPs)
scaffold0087 (59-150)||(36401-36493)
[»] scaffold0098 (1 HSPs)
scaffold0098 (56-150)||(45635-45730)
[»] scaffold0006 (1 HSPs)
scaffold0006 (72-150)||(2930-3009)


Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 6096371 - 6096129
Alignment:
Q  1 tgattttggagaaagtgaagaaacggcgtgtcatgaattatgaaggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtg 100  Q
    ||||||||||||||||||||||||| ||||||| ||||| |||||||| |||||||| |||||||| |||||||||||||||||||||||| ||||||||    
T  6096371 tgattttggagaaagtgaagaaacgtcgtgtcacgaattttgaaggcactgagcatggtttgcagggtgtccaattgtgacacgattttgggaaaacgtg 6096272  T
Q  101 acacgattttcggcttactgggcaagttttcagaataaggttggtc------------gtacgcaccaaacgtgtcacgatttgggaaatcatgatacga 188  Q
    ||||||||||||||||| ||| ||| ||||||| ||||||||||||            |||||||||||| |||||||||||||||||||||||| ||||    
T  6096271 acacgattttcggcttattggacaaattttcaggataaggttggtcgtaccttgggtcgtacgcaccaaatgtgtcacgatttgggaaatcatgacacga 6096172  T
Q  189 ttttgtccgggtatgaacacaatatatgcattctttgacccat 231  Q
    ||||||| || |||||||||| |||||||||||||||||||||    
T  6096171 ttttgtcaggatatgaacacagtatatgcattctttgacccat 6096129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 72 - 231
Target Start/End: Original strand, 36018330 - 36018489
Alignment:
Q  72 caattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtacgcaccaaacgtgtcacgattt 171  Q
    |||| ||||||||||||||| |||||||||||| ||||||||||| ||||||| ||||| || ||||||||||||||||||||||| | |||||||||||    
T  36018330 caatcgtgacacgattttgggaaaacgtgacacaattttcggcttgctgggcacgtttttaggataaggttggtcgtacgcaccaaccatgtcacgattt 36018429  T
Q  172 gggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattctttgacccat 231  Q
    |||||| | ||| ||||||||| |||| | ||||||| | ||||||||||||||||||||    
T  36018430 gggaaaacgtgacacgattttgcccggatctgaacactacatatgcattctttgacccat 36018489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 59 - 177
Target Start/End: Original strand, 51398499 - 51398617
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtacgcaccaaa 158  Q
    |||||||| |||||||||||||||||||||||| |||||||||||| |||||||| ||  |||||||||||| || ||| ||||||||||||||||||||    
T  51398499 tttgcagggtgtccaattgtgacacgattttgggaaaacgtgacacaattttcggtttgttgggcaagtttttaggatatggttggtcgtacgcaccaaa 51398598  T
Q  159 cgtgtcacgatttgggaaa 177  Q
    |||||||||||||||||||    
T  51398599 cgtgtcacgatttgggaaa 51398617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 44 - 231
Target Start/End: Complemental strand, 31340771 - 31340570
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttgg-aaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt 142  Q
    |||||||||||||| ||| |||| |||||||| |||||| |||||||| |||||| ||||||||||||||||||  ||||||||||||||| ||||||||    
T  31340771 aggcagtgagcatggttttcagggtgtccaatcgtgacatgattttgggaaaaacatgacacgattttcggcttgttgggcaagttttcaggataaggtt 31340672  T
Q  143 ggtc------------gtacgcaccaaacgtgtcacga-tttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattctttgaccc 229  Q
    ||||            |||||||||||||||| ||||| ||||||||||| ||| | |||||||||| | | ||||||||||||||||||||||||||||    
T  31340671 ggtcgtaccttgggtcgtacgcaccaaacgtgacacgattttgggaaatcgtgacatgattttgtccagatctgaacacaatatatgcattctttgaccc 31340572  T
Q  230 at 231  Q
    ||    
T  31340571 at 31340570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 72 - 231
Target Start/End: Complemental strand, 43404433 - 43404262
Alignment:
Q  72 caattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac------------gcaccaaac 159  Q
    |||| |||||||||||||||  ||||||||||||||||||||||| ||| |||||||||||| ||||||| ||||||||            |||||||||    
T  43404433 caatcgtgacacgattttggggaaacgtgacacgattttcggcttgctgagcaagttttcaggataaggtcggtcgtaccttgggtcgtacgcaccaaac 43404334  T
Q  160 gtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattctttgacccat 231  Q
    |||||||||||||||||||| ||| |||||||| ||||| | ||||||||||||||| ||||||||||||||    
T  43404333 gtgtcacgatttgggaaatcgtgacacgattttctccggatctgaacacaatatatgtattctttgacccat 43404262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 72 - 227
Target Start/End: Complemental strand, 43402490 - 43402323
Alignment:
Q  72 caattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt------------ggtcgtacgcaccaaac 159  Q
    |||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||            |||||||||||||||||    
T  43402490 caatcgtgacacgattttggagaaacgtgacacgattttcggcttgctgggcaagttttcaggataaggttggttgtatcttgggtcgtacgcaccaaac 43402391  T
Q  160 gtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattctttgac 227  Q
    |||||||||||||||||||  ||| | |||||||| | | | |||||| |||||||||||||||||||    
T  43402390 gtgtcacgatttgggaaattgtgacatgattttgttctgatctgaacataatatatgcattctttgac 43402323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 72 - 231
Target Start/End: Original strand, 40912805 - 40912976
Alignment:
Q  72 caattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgt------------acgcaccaaac 159  Q
    |||| |||| || ||||||| ||||||||||||||||||||||||  ||||||||||||| | |||||| |||||||            |||||||||||    
T  40912805 caatcgtgatacaattttgggaaaacgtgacacgattttcggcttgttgggcaagttttctggataaggctggtcgtatcttggatcgtacgcaccaaac 40912904  T
Q  160 gtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattctttgacccat 231  Q
    |||||||||||||||||||||||| |||||||||||||| | ||||||| || || ||||||||||||||||    
T  40912905 gtgtcacgatttgggaaatcatgacacgattttgtccggatctgaacactatgtaagcattctttgacccat 40912976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 150
Target Start/End: Original strand, 29812720 - 29812827
Alignment:
Q  44 aggcagtgagcatgattt-gcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt 142  Q
    |||||||||||||| ||| ||||| |||||||| ||||||||||||||| |||||||||||||||||| | ||| |||||||||||||||| ||||||||    
T  29812720 aggcagtgagcatggttttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgatttttgtcttgctgggcaagttttcaggataaggtt 29812819  T
Q  143 ggtcgtac 150  Q
    ||||||||    
T  29812820 ggtcgtac 29812827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 34490687 - 34490778
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||    
T  34490687 tttgcagggtatccaatcgtgacacgattttggaaaaacgtgacacgattttcggcttattgggcaagttttcaggataaggttggttgtac 34490778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 208
Target Start/End: Complemental strand, 55302692 - 55302517
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttg 143  Q
    |||||||||||||  ||| |||| ||| |||| |||||||||||| |||||| ||||| |||||||||||||| |||||||||||||||| |||||||||    
T  55302692 aggcagtgagcattgttttcagggtgttcaatcgtgacacgatttgggaaaa-cgtgatacgattttcggcttgctgggcaagttttcaggataaggttg 55302594  T
Q  144 gtc------------gtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacac 208  Q
    |||            ||||||||||||||||||||||||||||||||| ||| || ||||||||||| | |||||||    
T  55302593 gtcgtaccttgggtcgtacgcaccaaacgtgtcacgatttgggaaatcgtgacacaattttgtccggatctgaacac 55302517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 44 - 231
Target Start/End: Original strand, 4569391 - 4569590
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttg 143  Q
    |||||||| ||||| |||  ||| |||||||| |||||| |||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  4569391 aggcagtgcgcatggtttttagggtgtccaatcgtgacatgattttgggaaaacgtgacacgattttcggcttgctgggcaagttttcaggataaggttg 4569490  T
Q  144 gtc------------gtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattctttgacccat 231  Q
    |||            ||||||||||| ||||||||| ||  ||||| | ||| |||||||||  ||| | |||||| |||||| ||||||||||||||||    
T  4569491 gtcgtaccttgggtcgtacgcaccaaccgtgtcacggttgtggaaaacgtgacacgattttgctcggatttgaacaaaatataagcattctttgacccat 4569590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 49200174 - 49200073
Alignment:
Q  49 gtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgt 148  Q
    ||||||||| |||||||| |||||||| |||||||||| ||||  ||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  49200174 gtgagcatgttttgcagggtgtccaatcgtgacacgatgttggggaaacgtgacacgattttcggcttgctgggcatgttttcaggataaggttggtcgt 49200075  T
Q  149 ac 150  Q
    ||    
T  49200074 ac 49200073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 150
Target Start/End: Original strand, 46173173 - 46173279
Alignment:
Q  43 aaggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt 142  Q
    ||||||||||||||| |||||||| |||||||| ||||||||||||||| ||||| |||||||| || ||||||  |||||| |||||||| ||||||||    
T  46173173 aaggcagtgagcatggtttgcagggtgtccaatcgtgacacgattttgggaaaacatgacacga-ttccggcttgttgggcacgttttcaggataaggtt 46173271  T
Q  143 ggtcgtac 150  Q
    ||||||||    
T  46173272 ggtcgtac 46173279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 44 - 193
Target Start/End: Original strand, 54593144 - 54593305
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt- 142  Q
    |||||||||||||| ||| || | | | |||| ||||| | ||||||| |||||||||||||||||||  ||| ||||||| |||||||| ||||||||     
T  54593144 aggcagtgagcatggttttcatggtattcaatcgtgactcaattttgggaaaacgtgacacgattttcaacttgctgggcacgttttcaggataaggttg 54593243  T
Q  143 -----------ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 193  Q
               ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  54593244 gtcgtacattgggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgacacgattttg 54593305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 150
Target Start/End: Complemental strand, 5236943 - 5236861
Alignment:
Q  68 tgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||| ||||||| ||||||| |||||||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||    
T  5236943 tgtccaatcgtgacacaattttgggaaaacgtgacacgattttcggcttgctgggaaagttttcaggataagtttggtcgtac 5236861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 44331952 - 44331851
Alignment:
Q  49 gtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgt 148  Q
    ||||| ||| |||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| | |||||||  |||| ||| |||||    
T  44331952 gtgagtatgttttgcagggtgtccaatcgtgacacgattttggaaaaacgtgacacgatttttggcttcctgggtacgttttcaagataaagttagtcgt 44331853  T
Q  149 ac 150  Q
    ||    
T  44331852 ac 44331851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 69 - 150
Target Start/End: Complemental strand, 5258630 - 5258548
Alignment:
Q  69 gtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    ||||||| ||||||||||||||| ||| |||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  5258630 gtccaatcgtgacacgattttgggaaatcgtgacacgatttttggcttgctgggcaagattttcaggataaggttggtcgtac 5258548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 193
Target Start/End: Original strand, 29810541 - 29810687
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt------------ggtc 146  Q
    |||||||| |||||||| ||||||||||||| |||||||||  ||| ||||| ||||| |||| ||| ||||||| ||||||||            ||||    
T  29810541 tttgcagggtgtccaatcgtgacacgattttagaaaaacgtagcacaatttttggcttgctggacaaattttcaggataaggttggtcgtaccttgggtc 29810640  T
Q  147 gtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 193  Q
    ||||||||||||||||||||||||||||||| | ||| |||||||||    
T  29810641 gtacgcaccaaacgtgtcacgatttgggaaaacgtgacacgattttg 29810687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 44331232 - 44331333
Alignment:
Q  49 gtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgt 148  Q
    ||||| ||| ||||| || ||| |||| ||||||||||||||| |||| ||||||||||||| ||||| ||||| | |||||||| ||||||||||||||    
T  44331232 gtgagtatgttttgctgggtgttcaatcgtgacacgattttgggaaaaagtgacacgatttttggcttgctgggtacgttttcaggataaggttggtcgt 44331331  T
Q  149 ac 150  Q
    ||    
T  44331332 ac 44331333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 7761947 - 7762028
Alignment:
Q  69 gtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    ||||||| ||||||||||||||| ||| |||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  7761947 gtccaatcgtgacacgattttgggaaa-cgtgacacgatttttggcttgctgggcaagattttcaggataaggttggtcgtac 7762028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 7764134 - 7764216
Alignment:
Q  69 gtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    ||||||| ||||||||||||||| |||||||||||||||||| |||||  |||||||| |||| || ||||||||||||||||    
T  7764134 gtccaatcgtgacacgattttgggaaaacgtgacacgatttttggcttgttgggcaagatttttaggataaggttggtcgtac 7764216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 3393289 - 3393370
Alignment:
Q  69 gtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    ||||||| ||||||||||||||| ||| |||||||||||||| ||||| ||||||||| ||||||| |||| |||||||||||    
T  3393289 gtccaatcgtgacacgattttgggaaatcgtgacacgatttttggcttgctgggcaagattttcaggataa-gttggtcgtac 3393370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 40592353 - 40592431
Alignment:
Q  72 caattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||| ||| ||||||||||| |||||||||||||||||||  ||| |||| || |||||||| ||||||||||||||||    
T  40592353 caatcgtgtcacgattttgggaaaacgtgacacgattttcaacttgctggacacgttttcaggataaggttggtcgtac 40592431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 45094846 - 45094928
Alignment:
Q  69 gtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    ||||||| ||||||| ||||||| ||| |||||||||||||| |||||  |||||||| ||||||| ||||||||||||||||    
T  45094846 gtccaatcgtgacacaattttgggaaatcgtgacacgatttttggcttgttgggcaagattttcaggataaggttggtcgtac 45094928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 150
Target Start/End: Complemental strand, 36029637 - 36029530
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggtt 142  Q
    |||||| || |||| |||||||| ||   ||| ||| |||||||||||||||||||||||||||||||   ||| ||||| | |||||||| ||||||||    
T  36029637 aggcagcgaacatggtttgcagggtgcttaatcgtgtcacgattttggaaaaacgtgacacgattttcaaacttgctgggtacgttttcaggataaggtt 36029538  T
Q  143 ggtcgtac 150  Q
    ||||||||    
T  36029537 ggtcgtac 36029530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 16264887 - 16264785
Alignment:
Q  49 gtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggttggtcg 147  Q
    ||||||||| |||||||| ||  |||| ||| ||||||||||| |||||||||||||||||||   ||  ||||| | |||||||| |||||||||||||    
T  16264887 gtgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttcaaactagctgggtacgttttcaggataaggttggtcg 16264788  T
Q  148 tac 150  Q
    |||    
T  16264787 tac 16264785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 49200046 - 49200000
Alignment:
Q  185 acgattttgtccgggtatgaacacaatatatgcattctttgacccat 231  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||    
T  49200046 acgattttgtccggatctgaacacaatatatgcattctttgacccat 49200000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 40734156 - 40734221
Alignment:
Q  46 gcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc 111  Q
    |||||||||||| |||||||| ||  |||| ||| ||||||||||| |||||||||||||||||||    
T  40734156 gcagtgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttc 40734221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 40735087 - 40735152
Alignment:
Q  46 gcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc 111  Q
    |||||||||||| |||||||| ||  |||| ||| ||||||||||| |||||||||||||||||||    
T  40735087 gcagtgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttc 40735152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 8370036 - 8370099
Alignment:
Q  48 agtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc 111  Q
    |||||||||| |||||||| ||  |||| ||| ||||||||||| |||||||||||||||||||    
T  8370036 agtgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttc 8370099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 23410833 - 23410774
Alignment:
Q  51 gagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgatttt 110  Q
    ||||||| |||||||| |||||||| ||||||| |||||||||||||||| ||| |||||    
T  23410833 gagcatgttttgcagggtgtccaatcgtgacacaattttggaaaaacgtgtcacaatttt 23410774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 27027250 - 27027183
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc 111  Q
    |||||||||||||| |||||||  ||  |||| ||| ||||||||||| |||||||||||||||||||    
T  27027250 aggcagtgagcatggtttgcagagtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttc 27027183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 150
Target Start/End: Complemental strand, 27038585 - 27038478
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggtt 142  Q
    |||||||||||||| |||||||| ||  ||||  || ||||||||||| |||| ||||||||||||||   |||  |||| | |||||||| ||||||||    
T  27038585 aggcagtgagcatggtttgcagggtgctcaatcatgtcacgattttgggaaaatgtgacacgattttcaaacttgttgggtatgttttcaggataaggtt 27038486  T
Q  143 ggtcgtac 150  Q
    ||||||||    
T  27038485 ggtcgtac 27038478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 150
Target Start/End: Complemental strand, 35926034 - 35925927
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggtt 142  Q
    |||||||||||||| |||||||| ||  |||| ||| ||||| ||||  |||||||||||||||||||   |||  |||| | |||||||| ||||||||    
T  35926034 aggcagtgagcatggtttgcagggtgctcaatcgtgtcacgagtttgagaaaacgtgacacgattttcaaacttgttgggtacgttttcaggataaggtt 35925935  T
Q  143 ggtcgtac 150  Q
    ||||||||    
T  35925934 ggtcgtac 35925927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 150
Target Start/End: Complemental strand, 9636614 - 9636532
Alignment:
Q  69 gtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    ||||||| |||||| |||||||| ||| | |||||||||||| |||||  ||| |||| ||||||| ||||||||||||||||    
T  9636614 gtccaatcgtgacatgattttgggaaatcatgacacgatttttggcttgatggacaagattttcaggataaggttggtcgtac 9636532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 29812832 - 29812882
Alignment:
Q  143 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 193  Q
    ||||||||||||||||||||||||||||||| ||| | ||| |||||||||    
T  29812832 ggtcgtacgcaccaaacgtgtcacgatttggaaaaacgtgacacgattttg 29812882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 150
Target Start/End: Original strand, 47923445 - 47923553
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaag-ttttcagaataaggt 141  Q
    |||||||||||||| |||||||| ||  |||| ||| |||  |||||| |||||||||||||||||||   ||| ||||| | | ||||||| |||||||    
T  47923445 aggcagtgagcatggtttgcagggtgctcaatcgtgtcacatttttgggaaaacgtgacacgattttcaaacttgctgggtacgtttttcaggataaggt 47923544  T
Q  142 tggtcgtac 150  Q
    |||||||||    
T  47923545 tggtcgtac 47923553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 21711745 - 21711678
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc 111  Q
    |||||||||||||| ||| |||| ||  |||| ||| ||||||||||| |||||||||||| ||||||    
T  21711745 aggcagtgagcatggttttcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacaattttc 21711678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 30709342 - 30709405
Alignment:
Q  48 agtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc 111  Q
    |||||||||| |||||||| ||| |||| ||| ||||||||||  |||||||||||| ||||||    
T  30709342 agtgagcatggtttgcagggtgttcaatcgtgtcacgattttgagaaaacgtgacacaattttc 30709405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 5260781 - 5260727
Alignment:
Q  97 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    |||||||||||||| |||||  |||||||| ||||||| ||||||||||||||||    
T  5260781 cgtgacacgatttttggcttgttgggcaagattttcaggataaggttggtcgtac 5260727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 30709451 - 30709501
Alignment:
Q  143 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 193  Q
    ||||||||||||||| ||||||||||||||| ||| | ||| |||||||||    
T  30709451 ggtcgtacgcaccaatcgtgtcacgatttggaaaaacgtgacacgattttg 30709501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 8127145 - 8127068
Alignment:
Q  72 caattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgta 149  Q
    |||| ||| ||||||||||| |||  ||||||||||||||  ||| || || | |||||||| |||||||||||||||    
T  8127145 caatcgtgtcacgattttgggaaagtgtgacacgattttcaacttgctaggtacgttttcaggataaggttggtcgta 8127068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 24128212 - 24128245
Alignment:
Q  77 gtgacacgattttggaaaaacgtgacacgatttt 110  Q
    |||||||||||||| |||||||||||||||||||    
T  24128212 gtgacacgattttgtaaaaacgtgacacgatttt 24128245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 171
Target Start/End: Original strand, 34490783 - 34490811
Alignment:
Q  143 ggtcgtacgcaccaaacgtgtcacgattt 171  Q
    |||||||||||||||||||||||||||||    
T  34490783 ggtcgtacgcaccaaacgtgtcacgattt 34490811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 49 - 231
Target Start/End: Original strand, 11003 - 11197
Alignment:
Q  49 gtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtc-- 146  Q
    ||||||||| |||||||| |||||||| |||||||||||||||  ||| |||||||||||||||| || |||||||||||||||| ||||||||||||      
T  11003 gtgagcatgttttgcagggtgtccaatcgtgacacgattttggggaaatgtgacacgattttcggtttgctgggcaagttttcaggataaggttggtcgt 11102  T
Q  147 ----------gtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattctttgacccat 231  Q
              ||||||||||||||||||||||||||||||||| ||| |||||||||||||| | ||||||||||||||||||||||||||||||    
T  11103 acattgggtcgtacgcaccaaacgtgtcacgatttgggaaatcgtgacacgattttgtccggttctgaacacaatatatgcattctttgacccat 11197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 49)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 49 - 231
Target Start/End: Original strand, 6655401 - 6655595
Alignment:
Q  49 gtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtc-- 146  Q
    ||||||||| |||||||| |||||||| |||||||||||||||  ||| |||||||||||||||| || |||||||||||||||| ||||||||||||      
T  6655401 gtgagcatgttttgcagggtgtccaatcgtgacacgattttggggaaatgtgacacgattttcggtttgctgggcaagttttcaggataaggttggtcgt 6655500  T
Q  147 ----------gtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattctttgacccat 231  Q
              ||||||||||||||||||||||||||||||||| ||| |||||||||||||| | ||||||||||||||||||||||||||||||    
T  6655501 acattgggtcgtacgcaccaaacgtgtcacgatttgggaaatcgtgacacgattttgtccggttctgaacacaatatatgcattctttgacccat 6655595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 71 - 231
Target Start/End: Original strand, 2209187 - 2209347
Alignment:
Q  71 ccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtacgcaccaaacgtgtcacgatt 170  Q
    ||||| |||||||||||||||  |||||||||||||||||||| || || ||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  2209187 ccaatcgtgacacgattttggggaaacgtgacacgattttcggtttgctaggcaagttttcaggataaggttggtcgtacgcaccaaacgcgtcacgatt 2209286  T
Q  171 tgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattctttgacccat 231  Q
    ||||||||| ||| |  |||||||| |  | ||||||||||||| ||||||||||||||||    
T  2209287 tgggaaatcgtgacaaaattttgtctgaatctgaacacaatataagcattctttgacccat 2209347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 68 - 231
Target Start/End: Original strand, 40630448 - 40630623
Alignment:
Q  68 tgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac------------gcacc 155  Q
    |||||||| ||| ||||||||||| ||||||||||||||||||| |||| || ||||  ||||||||||||||||||||||||            |||||    
T  40630448 tgtccaatcgtgtcacgattttgggaaaacgtgacacgattttcagcttgctaggcacattttcagaataaggttggtcgtaccttgggtcatatgcacc 40630547  T
Q  156 aaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattctttgacccat 231  Q
    |||||||||||||||||||||||| ||| |||||||||||||| | |||||| |||||||||||||||||||||||    
T  40630548 aaacgtgtcacgatttgggaaatcgtgacacgattttgtccggatctgaacataatatatgcattctttgacccat 40630623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 68 - 231
Target Start/End: Complemental strand, 50674550 - 50674375
Alignment:
Q  68 tgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggt------------cgtacgcacc 155  Q
    |||||||| |||  |||||||||| ||||||||||| ||||||| |||| ||||||| |||||||| |||||||||||            ||||||||||    
T  50674550 tgtccaatcgtgttacgattttgggaaaacgtgacatgattttcagcttgctgggcacgttttcaggataaggttggttgtaccttgggtcgtacgcacc 50674451  T
Q  156 aaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattctttgacccat 231  Q
    |||||||||||||||||||||||||||| || ||||||||||| | ||||||||||||||||||||||||||||||    
T  50674450 aaacgtgtcacgatttgggaaatcatgacacaattttgtccggatctgaacacaatatatgcattctttgacccat 50674375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 59 - 193
Target Start/End: Complemental strand, 26176119 - 26175985
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtacgcaccaaa 158  Q
    |||||||| || ||||  ||||||| ||||||| ||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||    
T  26176119 tttgcagggtgcccaaccgtgacacaattttgggaaaacgtgacacgattttcggcttgatgggcaagttttcaggataaggttggtcgtacgcaccaaa 26176020  T
Q  159 cgtgtcacgatttgggaaatcatgatacgattttg 193  Q
    ||||||| ||||| | ||| | ||| |||||||||    
T  26176019 cgtgtcatgatttagcaaaacgtgacacgattttg 26175985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 68 - 193
Target Start/End: Original strand, 35661903 - 35662028
Alignment:
Q  68 tgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtacgcaccaaacgtgtcacg 167  Q
    |||||||| ||||||||||||||| |||| ||| |||||||||||||||  |||||| |||||||| ||||||||||||||||||||||| |||||||||    
T  35661903 tgtccaatcgtgacacgattttgggaaaatgtgtcacgattttcggcttgttgggcacgttttcaggataaggttggtcgtacgcaccaaccgtgtcacg 35662002  T
Q  168 atttgggaaatcatgatacgattttg 193  Q
    |||||| ||| | |||||| ||||||    
T  35662003 atttggcaaaacgtgatacaattttg 35662028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 68 - 208
Target Start/End: Original strand, 26363729 - 26363881
Alignment:
Q  68 tgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt------------ggtcgtacgcacc 155  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||| ||||||||            |||||||||||||    
T  26363729 tgtccaatcgtgacacgattttgggaaaacgtgacacgattttcggcttgctgagcaagttttcaggataaggttggtcataccttgggtcgtacgcacc 26363828  T
Q  156 aaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacac 208  Q
    ||||||||||| |||||||||||| ||| |||||||||||||| | |||||||    
T  26363829 aaacgtgtcacaatttgggaaatcgtgacacgattttgtccggatctgaacac 26363881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 41 - 150
Target Start/End: Original strand, 54882477 - 54882586
Alignment:
Q  41 tgaaggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataagg 140  Q
    ||||||||||||||||| |||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||  ||| || |||||||| ||||||    
T  54882477 tgaaggcagtgagcatggtttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgattttcggcttgttggacacgttttcaggataagg 54882576  T
Q  141 ttggtcgtac 150  Q
    ||| ||||||    
T  54882577 ttgatcgtac 54882586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 148
Target Start/End: Complemental strand, 9927971 - 9927867
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttg 143  Q
    ||||||||| |||| |||||||| ||| |||| ||||||||||||||| |||| ||||||||||||||||||| |||| ||||||||||| |||||||||    
T  9927971 aggcagtgaacatgttttgcagggtgttcaatcgtgacacgattttgggaaaatgtgacacgattttcggcttgctggacaagttttcaggataaggttg 9927872  T
Q  144 gtcgt 148  Q
    |||||    
T  9927871 gtcgt 9927867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 69 - 177
Target Start/End: Complemental strand, 56179110 - 56179001
Alignment:
Q  69 gtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtacgcaccaaacgtgtcacg 167  Q
    ||||||| ||||||||||||||| ||||||||||| |||||| ||||| ||||||||| ||||||| ||||||||||||||||||| ||| |||| ||||    
T  56179110 gtccaatcgtgacacgattttgggaaaacgtgacatgatttttggcttgctgggcaagattttcaggataaggttggtcgtacgcatcaatcgtgacacg 56179011  T
Q  168 atttgggaaa 177  Q
    || |||||||    
T  56179010 atctgggaaa 56179001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 59 - 193
Target Start/End: Complemental strand, 12740034 - 12739899
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtacgcaccaa 157  Q
    |||||||| |||||||  | ||||||||||||| ||||||| |||| ||||| ||||| ||||||||| ||||||| |||||||||||||||||||||||    
T  12740034 tttgcagggtgtccaaccgcgacacgattttgggaaaacgtaacacaatttttggcttgctgggcaagtttttcaggataaggttggtcgtacgcaccaa 12739935  T
Q  158 acgtgtcacgatttgggaaatcatgatacgattttg 193  Q
     ||||| | ||||| ||||| | ||| |||||||||    
T  12739934 tcgtgttatgattttggaaaacgtgacacgattttg 12739899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 44 - 150
Target Start/End: Complemental strand, 12745926 - 12745820
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagtttt-cagaataaggtt 142  Q
    ||||||||||| || || ||||| |||||||| |||||| |||||||| |||||||||||||||||||||||| ||||||||||||| ||| ||||||||    
T  12745926 aggcagtgagc-tgtttggcagggtgtccaatcgtgacatgattttgggaaaacgtgacacgattttcggcttgctgggcaagttttccaggataaggtt 12745828  T
Q  143 ggtcgtac 150  Q
    ||||||||    
T  12745827 ggtcgtac 12745820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 59 - 193
Target Start/End: Complemental strand, 12748240 - 12748105
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtacgcaccaa 157  Q
    |||||||| |||||||  | ||||||||||||| ||||||| |||| ||||| ||||| ||||||||| ||||||| |||||||||||||||||||||||    
T  12748240 tttgcagggtgtccaaccgcgacacgattttgggaaaacgtaacacaatttttggcttgctgggcaagtttttcaggataaggttggtcgtacgcaccaa 12748141  T
Q  158 acgtgtcacgatttgggaaatcatgatacgattttg 193  Q
     ||||| | ||||| ||||| | ||| |||||||||    
T  12748140 tcgtgttatgattttggaaaacgtgacacgattttg 12748105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 193
Target Start/End: Complemental strand, 34570891 - 34570763
Alignment:
Q  77 gtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt------------ggtcgtacgcaccaaacgtgtc 164  Q
    ||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||| ||||||||            ||||||||||||||||||||||    
T  34570891 gtgacacgattttgggaaaacgtgacacgattttcggcttgctggacaagttttcaggataaggttggttgtaccttgggtcgtacgcaccaaacgtgtc 34570792  T
Q  165 acgatttgggaaatcatgatacgattttg 193  Q
    ||||||||||||| | ||| |||||||||    
T  34570791 acgatttgggaaaacgtgacacgattttg 34570763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 86 - 231
Target Start/End: Complemental strand, 50263383 - 50263227
Alignment:
Q  86 ttttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac-----------gcaccaaacgtgtcacgatttggg 174  Q
    |||||| ||||||| ||||||||||||||||  |||| |||||||||||||||||||||||||||           |||||||| |||||||| ||||||    
T  50263383 ttttgggaaaacgtaacacgattttcggcttggtgggtaagttttcagaataaggttggtcgtaccttggtcgtacgcaccaaatgtgtcacggtttggg 50263284  T
Q  175 aaatcatgatacgattttgtccgggtatgaacacaatatatgcattctttgacccat 231  Q
    ||||| ||| ||||||||||| || | |||||||| |||| ||| ||||||||||||    
T  50263283 aaatcgtgacacgattttgtctggatctgaacacattataagcactctttgacccat 50263227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 177
Target Start/End: Complemental strand, 5370561 - 5370452
Alignment:
Q  69 gtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtacgcaccaaacgtgtcacg 167  Q
    ||||||| ||||||||||||||| ||| |||||||||||||| ||||| |||||||||  |||||| ||||||||||||||||||| ||| |||| ||||    
T  5370561 gtccaatcgtgacacgattttgggaaatcgtgacacgatttttggcttgctgggcaagactttcaggataaggttggtcgtacgcatcaatcgtggcacg 5370462  T
Q  168 atttgggaaa 177  Q
    ||| ||||||    
T  5370461 attggggaaa 5370452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 63 - 150
Target Start/End: Complemental strand, 52095852 - 52095764
Alignment:
Q  63 caggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    |||| |||||||| ||||||||||||||| |||||||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  52095852 cagggtgtccaatcgtgacacgattttgggaaaacgtgacacgatttttggcttgctgggcaagattttcaggataaggttggtcgtac 52095764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 61 - 150
Target Start/End: Complemental strand, 46570237 - 46570148
Alignment:
Q  61 tgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||| || ||||| |||||| |||||||| |||||||||||| ||||||||||| |||||||| ||||||| ||||||||||||||||    
T  46570237 tgcagggtgcccaatcgtgacaagattttgggaaaacgtgacacaattttcggcttgctgggcaaattttcaggataaggttggtcgtac 46570148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 71 - 150
Target Start/End: Original strand, 37740311 - 37740390
Alignment:
Q  71 ccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    ||||| || |||||||||||| ||||||||||| |||||||||||| | |||||||||||||| ||||||||||||||||    
T  37740311 ccaatcgtaacacgattttgggaaaacgtgacatgattttcggcttgcagggcaagttttcaggataaggttggtcgtac 37740390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 41639033 - 41639111
Alignment:
Q  72 caattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||| |||||||||||||||||||||||||||||||||||  |||  |||||| |||||||| ||||||||||||||||    
T  41639033 caatcgtgacacgattttggaaaaacgtgacacgattttcaacttgttgggcacgttttcaggataaggttggtcgtac 41639111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 150
Target Start/End: Original strand, 5429345 - 5429444
Alignment:
Q  51 gagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    ||||||| |||||||| |||| ||| ||||||||||||||| ||||||||| ||||||||| ||||  ||| |||||||||||  |||| ||||||||||    
T  5429345 gagcatgttttgcagggtgtctaatcgtgacacgattttgggaaaacgtgatacgattttcagcttgttggacaagttttcaggttaagattggtcgtac 5429444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 36314812 - 36314890
Alignment:
Q  72 caattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||| ||| ||||||||||| |||||||||||||||||||  ||| ||||||| |||||||| ||||||||||||||||    
T  36314812 caatcgtgtcacgattttgggaaaacgtgacacgattttcaacttgctgggcacgttttcaggataaggttggtcgtac 36314890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 36329021 - 36329099
Alignment:
Q  72 caattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||| ||| ||||||||||| |||||||||||||||||||  ||| ||||||| |||||||| ||||||||||||||||    
T  36329021 caatcgtgtcacgattttgggaaaacgtgacacgattttcaacttgctgggcacgttttcaggataaggttggtcgtac 36329099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 173
Target Start/End: Complemental strand, 10047871 - 10047778
Alignment:
Q  81 cacgattttggaaaaacgtgacacgattttcgg-cttactgggcaagttttcagaataaggttggtcgtacgcaccaaacgtgtcacgatttgg 173  Q
    ||||||||||| ||||||||||||||||| |   |||  |||| | |||||||| ||||||||||||||||||||||| |||||||||||||||    
T  10047871 cacgattttgggaaaacgtgacacgatttgcaaacttgatgggtacgttttcaggataaggttggtcgtacgcaccaatcgtgtcacgatttgg 10047778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 44 - 150
Target Start/End: Original strand, 25861585 - 25861693
Alignment:
Q  44 aggcagtgagcatga-tttgcaggttgtccaattgtgacacgattttgg-aaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggt 141  Q
    ||||||||||||||  ||| |||| ||  |||| ||| ||||||||||| ||||||||||||||||||||  ||| ||||||| |||||||| |||||||    
T  25861585 aggcagtgagcatggcttttcagggtgctcaatcgtgtcacgattttgggaaaaacgtgacacgattttcaacttgctgggcatgttttcaggataaggt 25861684  T
Q  142 tggtcgtac 150  Q
    |||||||||    
T  25861685 tggtcgtac 25861693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 231
Target Start/End: Complemental strand, 27417651 - 27417480
Alignment:
Q  72 caattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac------------gcaccaaac 159  Q
    |||| ||||||||||||||| |||||||||||||||||||  |||  | |||| | |||||| ||||||||||||||||            ||| ||| |    
T  27417651 caatcgtgacacgattttgggaaaacgtgacacgattttcaacttgttcggcacggtttcaggataaggttggtcgtaccttgggtcgtacgcatcaacc 27417552  T
Q  160 gtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattctttgacccat 231  Q
    |||||||||||||||||||| ||| |||||||||||||| | | ||||| ||||| ||| ||  ||||||||    
T  27417551 gtgtcacgatttgggaaatcgtgacacgattttgtccggatctaaacactatataagcactccatgacccat 27417480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 48142763 - 48142844
Alignment:
Q  97 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtacgcaccaaacgtgtcacgatttgggaaa 177  Q
    |||||||| ||||| |||||  |||||||| ||||||| ||||||||||||||||||| ||| |||| ||||||||||||||    
T  48142763 cgtgacacaatttttggcttgttgggcaagattttcaggataaggttggtcgtacgcatcaatcgtgacacgatttgggaaa 48142844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 54200363 - 54200310
Alignment:
Q  97 cgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||||||||||||||| |||||||||||||||  ||||||||||||||||    
T  54200363 cgtgacacgattttcggcttgctgggcaagttttcaagataaggttggtcgtac 54200310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 16628425 - 16628492
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc 111  Q
    |||||||||||||| |||||||| ||  |||| ||| ||||||||||| |||||||||||||||||||    
T  16628425 aggcagtgagcatgctttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttc 16628492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 8689083 - 8689157
Alignment:
Q  77 gtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    ||||||||||||||| |||||||||||||||||||   ||| ||||| | |||||||| ||||||||||||||||    
T  8689083 gtgacacgattttgggaaaacgtgacacgattttcaaacttgctgggtacgttttcaggataaggttggtcgtac 8689157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 29254205 - 29254257
Alignment:
Q  97 cgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgta 149  Q
    ||||||| ||||||||||||  ||||||||| |||||||||||||||||||||    
T  29254205 cgtgacatgattttcggcttgttgggcaagtattcagaataaggttggtcgta 29254257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 5429449 - 5429499
Alignment:
Q  143 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 193  Q
    ||||||||||||||| ||||||||||| ||||||| ||||| |||||||||    
T  5429449 ggtcgtacgcaccaatcgtgtcacgatgtgggaaaacatgacacgattttg 5429499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 177
Target Start/End: Complemental strand, 9927860 - 9927826
Alignment:
Q  143 ggtcgtacgcaccaaacgtgtcacgatttgggaaa 177  Q
    |||||||||||||||||||||||||||||||||||    
T  9927860 ggtcgtacgcaccaaacgtgtcacgatttgggaaa 9927826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 54867694 - 54867616
Alignment:
Q  72 caattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||| ||| ||| ||||||| |||||||||||||||||||  ||| ||||||| |||||  | ||||||||||||||||    
T  54867694 caatcgtgtcacaattttgggaaaacgtgacacgattttcaacttgctgggcacgtttttcggataaggttggtcgtac 54867616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 55086027 - 55085934
Alignment:
Q  78 tgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataa-ggttggtcgtacgcaccaaacgtgtcacgattt 171  Q
    ||||||||||| |||||| |||| ||||||||| ||| | || |||| | |||||| |||| ||||||||||||||| ||| |||||||||||||    
T  55086027 tgacacgatttgggaaaa-cgtggcacgattttgggcatgcttggcacgctttcaggataaaggttggtcgtacgcatcaaccgtgtcacgattt 55085934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 3778090 - 3778025
Alignment:
Q  46 gcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc 111  Q
    |||| ||||||| |||||||| ||  |||| ||| ||||||||||| |||||||||||||||||||    
T  3778090 gcagcgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttc 3778025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 150
Target Start/End: Original strand, 6743006 - 6743075
Alignment:
Q  81 cacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||| |||||| ||||||||||||||||||   |||  |||||| |||||||| ||||||||||||||||    
T  6743006 cacgtttttgggaaaacgtgacacgattttaaacttgttgggcacgttttcaggataaggttggtcgtac 6743075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 150
Target Start/End: Complemental strand, 5148206 - 5148114
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||| || ||||| ||| ||||||||||  ||||| |||||||||||||   ||||||||  | |||||||| ||||||||||||||||    
T  5148206 tttgcagggtgaccaatcgtggcacgattttgtgaaaacttgacacgattttcaaacttactggatacgttttcaggataaggttggtcgtac 5148114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 5396263 - 5396311
Alignment:
Q  63 caggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc 111  Q
    |||||||  |||| ||| |||||||||||||||||||||||||||||||    
T  5396263 caggttgctcaatcgtgtcacgattttggaaaaacgtgacacgattttc 5396311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 29254265 - 29254313
Alignment:
Q  145 tcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 193  Q
    ||||||||||||||||||||||||||||| ||| | ||| |||||||||    
T  29254265 tcgtacgcaccaaacgtgtcacgatttggaaaaacgtgacacgattttg 29254313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 30000931 - 30000877
Alignment:
Q  97 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    |||||||||||||| ||||| ||||||||| |||| || ||||||||||||||||    
T  30000931 cgtgacacgatttttggcttgctgggcaagatttttaggataaggttggtcgtac 30000877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 150
Target Start/End: Original strand, 36994242 - 36994324
Alignment:
Q  68 tgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||| ||||||| ||||| | |||||||| ||| ||||||||||| || |||| ||||||   ||||||||| ||||||    
T  36994242 tgtccaatcgtgacacaatttttggaaaacgtgtcacaattttcggcttgctaggcacgttttctagataaggttgatcgtac 36994324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 3909760 - 3909860
Alignment:
Q  49 gtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgt 148  Q
    ||||||||| |||||| | |||| ||| ||||||||||||| | ||||| |||||| ||||| ||| |  | |||| ||||| || ||||||||||||||    
T  3909760 gtgagcatgttttgcacggtgtcaaatcgtgacacgatttttggaaaacatgacactatttttggcatgtttggcacgttttaag-ataaggttggtcgt 3909858  T
Q  149 ac 150  Q
    ||    
T  3909859 ac 3909860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 48142822 - 48142859
Alignment:
Q  72 caattgtgacacgattttggaaaaacgtgacacgattt 109  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  48142822 caatcgtgacacgatttgggaaaaacgtgacacgattt 48142859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 52083044 - 52083007
Alignment:
Q  72 caattgtgacacgattttggaaaaacgtgacacgattt 109  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  52083044 caatcgtgacacgatttgggaaaaacgtgacacgattt 52083007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 52094051 - 52094014
Alignment:
Q  72 caattgtgacacgattttggaaaaacgtgacacgattt 109  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  52094051 caatcgtgacacgatttgggaaaaacgtgacacgattt 52094014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 13992783 - 13992731
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc 111  Q
    |||||||| || | ||| ||||||||||||||| ||| |||||||||||||||    
T  13992783 tttgcagggtgccaaatcgtgacacgattttgggaaatcgtgacacgattttc 13992731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 28468073 - 28468125
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc 111  Q
    |||||||| || | ||| |||||||||| |||||||| |||||||||||||||    
T  28468073 tttgcagggtgccaaatcgtgacacgatcttggaaaatcgtgacacgattttc 28468125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 41639133 - 41639181
Alignment:
Q  160 gtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacac 208  Q
    |||||||||||||||||| ||||| ||||||||||| || | |||||||    
T  41639133 gtgtcacgatttgggaaaccatgacacgattttgtctggatctgaacac 41639181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 59 - 233
Target Start/End: Original strand, 29608207 - 29608382
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgatttt-ggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtacgcaccaa 157  Q
    |||||||| |||||||| ||||||||||||| ||  ||| |||| || ||||||| |||  ||||||||||||||| |||||||||||||||||||||||    
T  29608207 tttgcagggtgtccaatcgtgacacgatttttggggaaaagtgatacaattttcgacttgttgggcaagttttcaggataaggttggtcgtacgcaccaa 29608306  T
Q  158 acgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattctttgacccatat 233  Q
    ||||||||| |||| ||||||||||| |||||||||||||| | ||||||||||||| ||||||||||||||||||    
T  29608307 acgtgtcacaatttaggaaatcatgacacgattttgtccggatctgaacacaatataagcattctttgacccatat 29608382  T

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Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 59 - 231
Target Start/End: Complemental strand, 6360625 - 6360441
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgta--------- 149  Q
    |||||||| || |||||||||||||||||||||  |||||||||||||||||||||||  ||||||||||||||| |||| ||||||||||             
T  6360625 tttgcagggtgcccaattgtgacacgattttggggaaacgtgacacgattttcggcttgttgggcaagttttcaggataatgttggtcgtatcttgggtc 6360526  T
Q  150 ---cgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattctttgacccat 231  Q
       |||||||||||||||||||||||||||||  ||| |||||||||||||| | |||||||| |||| ||||||||||||||||    
T  6360525 gtacgcaccaaacgtgtcacgatttgggaaattgtgacacgattttgtccggatctgaacacattataagcattctttgacccat 6360441  T

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Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 44 - 150
Target Start/End: Complemental strand, 47674454 - 47674347
Alignment:
Q  44 aggcagtgagcatgattt-gcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt 142  Q
    |||||||||||||| ||| ||||| |||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  47674454 aggcagtgagcatggttttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgattttcggcttgctgggcaagttttcaggataaggtt 47674355  T
Q  143 ggtcgtac 150  Q
    ||||||||    
T  47674354 ggtcgtac 47674347  T

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Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 44 - 150
Target Start/End: Complemental strand, 47676647 - 47676540
Alignment:
Q  44 aggcagtgagcatgattt-gcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt 142  Q
    |||||||||||||| ||| ||||| |||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  47676647 aggcagtgagcatggttttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgattttcggcttgctgggcaagttttcaggataaggtt 47676548  T
Q  143 ggtcgtac 150  Q
    ||||||||    
T  47676547 ggtcgtac 47676540  T

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Target: chr7; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 94 - 193
Target Start/End: Complemental strand, 31733410 - 31733311
Alignment:
Q  94 aaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 193  Q
    ||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| | ||| |||||||||    
T  31733410 aaacgtgacacaattttcggcttgctgggcaagttttcaggataaggttggtcgtacgcaccaaacgtgtaacgatttgggaaaacgtgacacgattttg 31733311  T

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Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 44 - 150
Target Start/End: Original strand, 27347581 - 27347687
Alignment:
Q  44 aggcagtgagca-tgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt 142  Q
    |||||||||||| || |||||||| || ||||| ||||||||||||||| ||||| ||||| |||||||||||| |||||||||||||||| ||||||||    
T  27347581 aggcagtgagcactgttttgcagggtgcccaatcgtgacacgattttgggaaaac-tgacatgattttcggcttgctgggcaagttttcaggataaggtt 27347679  T
Q  143 ggtcgtac 150  Q
    ||||||||    
T  27347680 ggtcgtac 27347687  T

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Target: chr7; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 44 - 150
Target Start/End: Original strand, 4585819 - 4585925
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttg 143  Q
    |||||||||||||| |||||||| |||||||| ||||||| ||||||| ||||||||||| |||||| |||||  |||| |||||||||  |||||||||    
T  4585819 aggcagtgagcatgttttgcagggtgtccaatcgtgacactattttgggaaaacgtgacaagatttttggcttgttgggtaagttttcaatataaggttg 4585918  T
Q  144 gtcgtac 150  Q
    |||||||    
T  4585919 gtcgtac 4585925  T

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Target: chr7; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 193
Target Start/End: Complemental strand, 14070345 - 14070182
Alignment:
Q  43 aaggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggt 141  Q
    ||||||||||||||| ||| |||| ||| |||| ||||||||||||||| |||||||||||||||||||| ||| || |||||| ||||||  |||||||    
T  14070345 aaggcagtgagcatggttttcagggtgttcaatcgtgacacgattttgggaaaacgtgacacgattttcgacttgctaggcaagtttttcaagataaggt 14070246  T
Q  142 tggtcgtac------------gcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 193  Q
    |||||||||            ||||||||||||||||||||||||||| | ||| |||||||||    
T  14070245 tggtcgtaccttgggtcgtatgcaccaaacgtgtcacgatttgggaaaacgtgacacgattttg 14070182  T

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Target: chr7; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 193
Target Start/End: Complemental strand, 14380373 - 14380210
Alignment:
Q  43 aaggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggt 141  Q
    ||||||||||||||| ||| |||| ||| |||| ||||||||||||||| |||||||||||||||||||| ||| || |||||| ||||||  |||||||    
T  14380373 aaggcagtgagcatggttttcagggtgttcaatcgtgacacgattttgggaaaacgtgacacgattttcgacttgctaggcaagtttttcaagataaggt 14380274  T
Q  142 tggtcgtac------------gcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 193  Q
    |||||||||            ||||||||||||||||||||||||||| | ||| |||||||||    
T  14380273 tggtcgtaccttgggtcgtatgcaccaaacgtgtcacgatttgggaaaacgtgacacgattttg 14380210  T

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Target: chr7; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 63 - 150
Target Start/End: Original strand, 23554716 - 23554804
Alignment:
Q  63 caggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    |||| |||||||| ||||||||||||||| |||||||||||||||||||| ||| ||||||||| ||||||| ||||||||||||||||    
T  23554716 cagggtgtccaatcgtgacacgattttgggaaaacgtgacacgattttcgacttgctgggcaagtttttcaggataaggttggtcgtac 23554804  T

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Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 18126318 - 18126408
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||| |||||||| ||| ||||||||||||||||||||| ||||||||||||||  ||||||||||||||| |||| |||||||||||    
T  18126318 tttgcagggtgtccaatcgtg-cacgattttggaaaaacgtgatacgattttcggcttgttgggcaagttttcaggataatgttggtcgtac 18126408  T

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Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 151 - 231
Target Start/End: Complemental strand, 48599933 - 48599853
Alignment:
Q  151 gcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattctttgacccat 231  Q
    |||||||||||||||||||| |||||||||||| || ||||||||||  | ||||||||||||||||||||||| ||||||    
T  48599933 gcaccaaacgtgtcacgattggggaaatcatgacacaattttgtccgaatctgaacacaatatatgcattcttttacccat 48599853  T

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Target: chr7; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 2389735 - 2389838
Alignment:
Q  47 cagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtc 146  Q
    ||||||||||| |||  ||| |||||||| ||||||||||||||  |||| |||||||||||||| |||| ||||| | |||||||| ||||||||||||    
T  2389735 cagtgagcatggtttttagggtgtccaatcgtgacacgattttgagaaaatgtgacacgattttcagcttgctgggaacgttttcaggataaggttggtc 2389834  T
Q  147 gtac 150  Q
    ||||    
T  2389835 gtac 2389838  T

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Target: chr7; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 208
Target Start/End: Complemental strand, 32358564 - 32358388
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt- 142  Q
    |||||||||||||| ||| |||| | |||||| |||| |||||||||| |||||||||||| |||||| |||| ||||||| |||||||| |||| |||     
T  32358564 aggcagtgagcatggttttcagggtatccaatcgtgatacgattttgggaaaacgtgacacaattttcagcttgctgggcacgttttcaggataaagttg 32358465  T
Q  143 -----------ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacac 208  Q
               | ||||||||||||||||||||| ||||||| ||||  ||| |||||||||||||| | |||||||    
T  32358464 atcgtaccttggatcgtacgcaccaaacgtgtcatgatttggaaaattgtgacacgattttgtccggatctgaacac 32358388  T

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Target: chr7; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 150
Target Start/End: Original strand, 43863943 - 43864025
Alignment:
Q  68 tgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||| ||  | || |||||||||| ||||||||||||||||    
T  43863943 tgtccaatcgtgacacgattttgggaaaacgtgacacgattttcggtttgttaggaaagttttcaggataaggttggtcgtac 43864025  T

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Target: chr7; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 33332032 - 33332110
Alignment:
Q  72 caattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||| |||||||||||||||||||||||||||||||  ||| |||||||  ||||||  ||||||||||||||||    
T  33332032 caattgtgtcacgattttggaaaaacgtgacacgattttcaacttgctgggcacattttcaagataaggttggtcgtac 33332110  T

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Target: chr7; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 4539028 - 4538955
Alignment:
Q  77 gtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    ||||||||||||||| ||||||||||||||||||||| || ||  |||||||||||| | ||||||||||||||    
T  4539028 gtgacacgattttgggaaaacgtgacacgattttcggtttgctaagcaagttttcaggacaaggttggtcgtac 4538955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 171
Target Start/End: Complemental strand, 2361635 - 2361540
Alignment:
Q  77 gtgacacgattttggaaaaacgtgacacgatttt-cggcttactgggcaagttttcagaataaggttggtcgtacgcaccaaacgtgtcacgattt 171  Q
    |||||||||||||||  ||||||||||| ||||| ||  || |||| ||| |||| || ||||||||||||||| |||||||||||||||||||||    
T  2361635 gtgacacgattttggggaaacgtgacacaatttttcgatttgctggacaaatttttaggataaggttggtcgtatgcaccaaacgtgtcacgattt 2361540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 4796238 - 4796329
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||| ||  |||| |||||||||||||||||||||||||||||||||||  |||  |||||| |||||||| |||  |||||||||||    
T  4796238 tttgcagggtgctcaatcgtgacacgattttggaaaaacgtgacacgattttcaacttgatgggcacgttttcaggatagagttggtcgtac 4796329  T

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Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 4178457 - 4178539
Alignment:
Q  69 gtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    ||||||| ||||||||||||||| ||| |||||||||||||| |||||  | |||||| ||||||| ||||||||||||||||    
T  4178457 gtccaatcgtgacacgattttgggaaatcgtgacacgatttttggcttgttaggcaagattttcaggataaggttggtcgtac 4178539  T

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Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 150
Target Start/End: Original strand, 2647288 - 2647357
Alignment:
Q  81 cacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    ||||||||||| ||||||||||| |||||||  ||| ||||||| |||||||| ||||||||||||||||    
T  2647288 cacgattttgggaaaacgtgacatgattttcaacttgctgggcacgttttcaggataaggttggtcgtac 2647357  T

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Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 150
Target Start/End: Original strand, 19495646 - 19495735
Alignment:
Q  63 caggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    |||| |||||||| ||||||| ||||||| |||||||| |||||||||  ||||| ||||||||| ||||||| ||||||||||||||||    
T  19495646 cagggtgtccaatcgtgacacaattttgggaaaacgtgccacgattttttggcttgctgggcaagattttcaggataaggttggtcgtac 19495735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 193
Target Start/End: Complemental strand, 2761759 - 2761651
Alignment:
Q  97 cgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac------------gcaccaaacgtgtcacgatttgggaaatcatgat 184  Q
    ||||||||||||||| |||| |||||||||||||||| ||||| ||||||||||            ||||||||||||||||||||||||||| | |||     
T  2761759 cgtgacacgattttcagcttgctgggcaagttttcaggataagattggtcgtaccttgggtcgtacgcaccaaacgtgtcacgatttgggaaaacgtgac 2761660  T
Q  185 acgattttg 193  Q
    |||||||||    
T  2761659 acgattttg 2761651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 150
Target Start/End: Original strand, 26416995 - 26417077
Alignment:
Q  68 tgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    ||||||||||||||||||||||||  ||| |||||||||||||  | ||  ||| |||||||||||  |||||||||||||||    
T  26416995 tgtccaattgtgacacgattttggggaaatgtgacacgatttttagtttgttggacaagttttcagggtaaggttggtcgtac 26417077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 49092232 - 49092127
Alignment:
Q  47 cagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcg-gcttactgggcaag-ttttcagaataaggttgg 144  Q
    ||||||||||| |||||||| ||  |||| ||| ||||||||||| |||| |||||||||||||||  ||| ||||| | | ||||||| ||||||||||    
T  49092232 cagtgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaatgtgacacgattttcgaacttgctgggtacgtttttcaggataaggttgg 49092133  T
Q  145 tcgtac 150  Q
    ||||||    
T  49092132 tcgtac 49092127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 146
Target Start/End: Original strand, 48489103 - 48489190
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtc 146  Q
    |||||||| ||| |||  |||||||||||| || ||||||||||||| |||| ||||| ||||||| | || ||| ||||||||||||    
T  48489103 tttgcagggtgttcaaccgtgacacgatttagggaaaacgtgacacggtttttggcttgctgggcatgcttccaggataaggttggtc 48489190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 18126413 - 18126463
Alignment:
Q  143 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 193  Q
    |||||||||||||||||||||||||||||| |||| | ||| |||||||||    
T  18126413 ggtcgtacgcaccaaacgtgtcacgatttgagaaaacgtgacacgattttg 18126463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 30026481 - 30026404
Alignment:
Q  72 caattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||| |||||| ||||||||  |||||||||||||||||| |||| | ||||| | |||||| ||||||||||||||||    
T  30026481 caatcgtgacatgattttggggaaacgtgacacgattttcagcttgccgggcacg-tttcaggataaggttggtcgtac 30026404  T

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Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 1113367 - 1113420
Alignment:
Q  97 cgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||||||||||||| |  ||||||| ||||||| ||||||||||||||||    
T  1113367 cgtgacacgattttcggcctgatgggcaaattttcaggataaggttggtcgtac 1113420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 150
Target Start/End: Complemental strand, 79933 - 79826
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaag-ttttcagaataaggt 141  Q
    |||||||||||||| |||||||||  || ||| ||| |||||||||||||||| |||||| |||||||   ||| ||||| | | ||||||| |||||||    
T  79933 aggcagtgagcatggtttgcaggtgctc-aatcgtgtcacgattttggaaaaatgtgacaagattttcaaacttgctgggtacgtttttcaggataaggt 79835  T
Q  142 tggtcgtac 150  Q
    |||||||||    
T  79834 tggtcgtac 79826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 2389865 - 2389911
Alignment:
Q  185 acgattttgtccgggtatgaacacaatatatgcattctttgacccat 231  Q
    |||||||||||||| | |||||||||| || ||||||||||||||||    
T  2389865 acgattttgtccggatctgaacacaatgtaagcattctttgacccat 2389911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 2647362 - 2647412
Alignment:
Q  143 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 193  Q
    ||||||||||||||| |||||||||||||||  || | |||||||||||||    
T  2647362 ggtcgtacgcaccaatcgtgtcacgatttggacaaacgtgatacgattttg 2647412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 177
Target Start/End: Original strand, 4585930 - 4585964
Alignment:
Q  143 ggtcgtacgcaccaaacgtgtcacgatttgggaaa 177  Q
    ||||||||||||||||| |||||||||||||||||    
T  4585930 ggtcgtacgcaccaaacatgtcacgatttgggaaa 4585964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 24515218 - 24515164
Alignment:
Q  97 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    |||||||| ||||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  24515218 cgtgacacaatttttggcttgctgggcaagattttcaggataaggttggtcgtac 24515164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 26417082 - 26417132
Alignment:
Q  143 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 193  Q
    ||||||||||||||| |||||||||||||||  |||| ||| |||||||||    
T  26417082 ggtcgtacgcaccaaccgtgtcacgatttggccaatcgtgacacgattttg 26417132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 177
Target Start/End: Original strand, 27347692 - 27347726
Alignment:
Q  143 ggtcgtacgcaccaaacgtgtcacgatttgggaaa 177  Q
    ||||||||||||||||||||||||| |||||||||    
T  27347692 ggtcgtacgcaccaaacgtgtcacggtttgggaaa 27347726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 34311330 - 34311285
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgatttt 89  Q
    |||||||||||||| |||||||| ||||||||  ||||||||||||    
T  34311330 aggcagtgagcatggtttgcagggtgtccaatcatgacacgatttt 34311285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 48599991 - 48599934
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggctt 116  Q
    |||||||| ||  |||| ||||||||||| |||  |||||||||||||||||||||||    
T  48599991 tttgcagggtgcacaatcgtgacacgattatggggaaacgtgacacgattttcggctt 48599934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 21646547 - 21646495
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc 111  Q
    |||||||| || | ||| |||||||||| |||||||| |||||||||||||||    
T  21646547 tttgcagggtgccaaatcgtgacacgatcttggaaaatcgtgacacgattttc 21646495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 25767450 - 25767398
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc 111  Q
    |||||||| || | ||| ||||||||||||||| ||| |||||||||||||||    
T  25767450 tttgcagggtgccaaatcgtgacacgattttgggaaatcgtgacacgattttc 25767398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 49 - 231
Target Start/End: Complemental strand, 42435714 - 42435520
Alignment:
Q  49 gtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgt 148  Q
    ||||||||| |||||||| |||||||| |||||||||||||||  ||||||||||||||||||| ||| || ||||||||||||| ||||||||||||||    
T  42435714 gtgagcatgttttgcagggtgtccaatcgtgacacgattttggggaaacgtgacacgattttcgtcttgcttggcaagttttcaggataaggttggtcgt 42435615  T
Q  149 ac------------gcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattctttgacccat 231  Q
    ||            ||||||||||||||||||||||||||||| ||| | |||||||||||| | ||||||||||||||||||||||||||||||    
T  42435614 accttgggtcgtacgcaccaaacgtgtcacgatttgggaaatcgtgacatgattttgtccggttctgaacacaatatatgcattctttgacccat 42435520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 44 - 150
Target Start/End: Original strand, 15212443 - 15212550
Alignment:
Q  44 aggcagtgagcatgattt-gcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt 142  Q
    |||||||||||||| ||| ||||| |||||||| ||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||| ||||||||    
T  15212443 aggcagtgagcatggttttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgattttcggcttgctgagcaagttttcaggataaggtt 15212542  T
Q  143 ggtcgtac 150  Q
    ||||||||    
T  15212543 ggtcgtac 15212550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 49 - 193
Target Start/End: Original strand, 43036086 - 43036242
Alignment:
Q  49 gtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt------ 142  Q
    ||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||  ||||||||||||||| ||||||||          
T  43036086 gtgagcatgttttgcagggtgtccaatcgtgacacgattttggaaaaacgtgacacgattttcgacttgttgggcaagttttcaggataaggttgatcgt 43036185  T
Q  143 ------ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 193  Q
          | ||||||||||||||||||||||||||||||||| | ||| |||||||||    
T  43036186 accttggatcgtacgcaccaaacgtgtcacgatttgggaaaacgtgacacgattttg 43036242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 30143005 - 30143106
Alignment:
Q  49 gtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgt 148  Q
    ||||||||| |||||||| |||||||| ||||||||||||||| |||| ||||||||||||||||||| |||| |||||||| || ||||||||||||||    
T  30143005 gtgagcatgttttgcagggtgtccaatcgtgacacgattttgggaaaatgtgacacgattttcggcttgctggacaagttttaaggataaggttggtcgt 30143104  T
Q  149 ac 150  Q
    ||    
T  30143105 ac 30143106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 11383449 - 11383552
Alignment:
Q  47 cagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtc 146  Q
    ||||||||||| |||  ||| |||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||| ||||||  ||||||||||||    
T  11383449 cagtgagcatggtttttagggtgtccaattgtgacacgattttgggaaaacgtgacacgattttcagcttgctgggcaaattttcaagataaggttggtc 11383548  T
Q  147 gtac 150  Q
    ||||    
T  11383549 gtac 11383552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 27810971 - 27811061
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgta 149  Q
    |||||||| |||||||| ||||||||||||||  |||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  27810971 tttgcagggtgtccaatcgtgacacgattttgagaaaatgtgacacgattttcggcttgctgggcaagttttcaggataaggttggtcgta 27811061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 44 - 150
Target Start/End: Original strand, 22975974 - 22976080
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttg 143  Q
    |||||||| ||||| ||| |||| |||||||| ||||||||||||||| ||||||||||||||||||| |||| || | ||||||||||| ||||||||     
T  22975974 aggcagtgggcatggttttcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgattttcagcttgcttgacaagttttcaggataaggttt 22976073  T
Q  144 gtcgtac 150  Q
    |||||||    
T  22976074 gtcgtac 22976080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 97 - 231
Target Start/End: Original strand, 4283039 - 4283185
Alignment:
Q  97 cgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac------------gcaccaaacgtgtcacgatttgggaaatcatgat 184  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||||||            ||||||||||||| | ||||||||||||| |||     
T  4283039 cgtgacacgattttcggcttgctgggcaagttttcaggataaggttggtcgtaccttgggtcgtatgcaccaaacgtgttaggatttgggaaatcgtgac 4283138  T
Q  185 acgattttgtccgggtatgaacacaatatatgcattctttgacccat 231  Q
    || ||||||| ||| | ||||||||||| | ||||||||||||||||    
T  4283139 accattttgttcggatctgaacacaatacaagcattctttgacccat 4283185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 63 - 150
Target Start/End: Original strand, 4731335 - 4731422
Alignment:
Q  63 caggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||| |||||||| ||||||||||||||| ||||| ||||| |||||||||||| |||| || |||||||||||||| ||||||||||    
T  4731335 cagggtgtccaatcgtgacacgattttgggaaaacatgacatgattttcggcttgctggacacgttttcagaataagattggtcgtac 4731422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 69 - 150
Target Start/End: Complemental strand, 1746704 - 1746622
Alignment:
Q  69 gtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    ||||||| ||||||||||||||| ||| |||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  1746704 gtccaatcgtgacacgattttgggaaatcgtgacacgatttttggcttgctgggcaagattttcaggataaggttggtcgtac 1746622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 150
Target Start/End: Complemental strand, 12703125 - 12703043
Alignment:
Q  68 tgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||| ||||||||||||||| ||||||||||||||||||| |||| ||  ||||| |||||| ||||||||||||||||    
T  12703125 tgtccaatcgtgacacgattttgggaaaacgtgacacgattttcagcttgctaagcaagctttcaggataaggttggtcgtac 12703043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 4743699 - 4743597
Alignment:
Q  49 gtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcg 147  Q
    ||||||||| |||| ||| |||||||| ||||||||||||||   ||||||||||||||||||| ||| || |||| | ||||||| |||||||||||||    
T  4743699 gtgagcatgttttgaagggtgtccaatcgtgacacgattttgaggaaacgtgacacgattttcgacttgcttggcacgtttttcaggataaggttggtcg 4743600  T
Q  148 tac 150  Q
    |||    
T  4743599 tac 4743597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 31217939 - 31218021
Alignment:
Q  69 gtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    ||||||||||||||||||||||| ||| |||||||||||||| |||||  |||||||| |||| || ||||||||||||||||    
T  31217939 gtccaattgtgacacgattttgggaaatcgtgacacgatttttggcttgttgggcaagatttttaggataaggttggtcgtac 31218021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 34254805 - 34254732
Alignment:
Q  78 tgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    |||||||||||||| ||| |||||||||||||| || || ||||||||| ||||||| ||||||||||||||||    
T  34254805 tgacacgattttgggaaatcgtgacacgatttttggattgctgggcaagattttcaggataaggttggtcgtac 34254732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 40221228 - 40221308
Alignment:
Q  68 tgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgt 148  Q
    |||||||| ||| ||||||||||| ||||||||||||||||||| ||||  ||| || |||||||| |||||||| |||||    
T  40221228 tgtccaatcgtgtcacgattttgggaaaacgtgacacgattttcagcttgttggacacgttttcaggataaggtttgtcgt 40221308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 150
Target Start/End: Complemental strand, 34256990 - 34256908
Alignment:
Q  69 gtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    ||||||| ||||||||||||||| ||| |||||||||||||| ||||| ||| ||||| ||||||| ||||| ||||| ||||    
T  34256990 gtccaatcgtgacacgattttgggaaatcgtgacacgatttttggcttgctgagcaagattttcaggataagattggttgtac 34256908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 42497897 - 42497979
Alignment:
Q  69 gtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    ||||||| ||||||||||||||| |||  ||||||||||| | ||||| ||||||||| ||||||| |||||||| |||||||    
T  42497897 gtccaatcgtgacacgattttgggaaattgtgacacgattattggcttgctgggcaagattttcaggataaggttagtcgtac 42497979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 4733502 - 4733555
Alignment:
Q  63 caggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggctt 116  Q
    |||| ||| |||| ||||||||||||||| ||||||||||||||||||||||||    
T  4733502 cagggtgttcaatcgtgacacgattttgggaaaacgtgacacgattttcggctt 4733555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 10014822 - 10014923
Alignment:
Q  49 gtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgt 148  Q
    ||||||||| ||| |||| | |||||| |||||||||||||||  || | |||||||||||| ||| | || |||| |||| ||| ||||||||||||||    
T  10014822 gtgagcatgtttttcagggtttccaatcgtgacacgattttgggcaatcatgacacgatttttggcatgcttggcacgtttacaggataaggttggtcgt 10014921  T
Q  149 ac 150  Q
    ||    
T  10014922 ac 10014923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 5702048 - 5702140
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||| ||  |||| ||| |||||||||||||||||||||||||||||||   ||| ||||| |  ||||||| ||||||||||||||||    
T  5702048 tttgcagggtgctcaatcgtgtcacgattttggaaaaacgtgacacgattttcaaacttgctgggtacattttcaggataaggttggtcgtac 5702140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 150
Target Start/End: Complemental strand, 19945825 - 19945743
Alignment:
Q  69 gtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    ||||||| ||||||||||||| | ||| |||||||||||||| |||||  |||| ||| ||||||| ||||||||| ||||||    
T  19945825 gtccaatcgtgacacgattttaggaaatcgtgacacgatttttggcttgttggggaagattttcaggataaggttgatcgtac 19945743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 150
Target Start/End: Complemental strand, 1345873 - 1345775
Alignment:
Q  51 gagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    ||||||| | |||||| ||| |||| ||||||||||||  |||||  ||||||| |||||| |||| || | || |||||||| ||||||||||||||||    
T  1345873 gagcatgttctgcagggtgttcaatcgtgacacgatttgagaaaat-gtgacacaattttcagcttgcttgacacgttttcaggataaggttggtcgtac 1345775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 177
Target Start/End: Original strand, 15212555 - 15212589
Alignment:
Q  143 ggtcgtacgcaccaaacgtgtcacgatttgggaaa 177  Q
    ||||||||||||||||||||||||||||| |||||    
T  15212555 ggtcgtacgcaccaaacgtgtcacgatttaggaaa 15212589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 17982363 - 17982417
Alignment:
Q  97 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    |||||||||||||| ||||| ||||||||| |||| || ||||||||||||||||    
T  17982363 cgtgacacgatttttggcttgctgggcaagatttttaggataaggttggtcgtac 17982417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 30143111 - 30143161
Alignment:
Q  143 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 193  Q
    ||||||||||||||| ||||||||||||||| ||| | ||| |||||||||    
T  30143111 ggtcgtacgcaccaaccgtgtcacgatttggcaaaacgtgacacgattttg 30143161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 33351919 - 33351969
Alignment:
Q  143 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 193  Q
    |||| |||||||||||||||||| ||||||||||| | ||| |||||||||    
T  33351919 ggtcatacgcaccaaacgtgtcatgatttgggaaaacgtgacacgattttg 33351969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 40221337 - 40221383
Alignment:
Q  185 acgattttgtccgggtatgaacacaatatatgcattctttgacccat 231  Q
    |||||||||| ||| | ||||||||||||| ||||||||||||||||    
T  40221337 acgattttgttcggatctgaacacaatataagcattctttgacccat 40221383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 44303564 - 44303618
Alignment:
Q  97 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    |||||||||||||| ||||| ||||||||| ||| ||| ||||||||||||||||    
T  44303564 cgtgacacgatttttggcttgctgggcaagatttccaggataaggttggtcgtac 44303618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 33351844 - 33351888
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgaca 103  Q
    |||||||| |||||||| ||||||||||||||| ||||| |||||    
T  33351844 tttgcagggtgtccaatcgtgacacgattttgggaaaacatgaca 33351888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 171
Target Start/End: Original strand, 40221315 - 40221343
Alignment:
Q  143 ggtcgtacgcaccaaacgtgtcacgattt 171  Q
    |||||||||||||||||||||||||||||    
T  40221315 ggtcgtacgcaccaaacgtgtcacgattt 40221343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 44 - 231
Target Start/End: Complemental strand, 81011 - 80812
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttg 143  Q
    |||||||||||||  ||| |||| | |||||| ||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||| |||||||||    
T  81011 aggcagtgagcattgttttcagggtatccaatcgtgacacgattttgggaaaacgtggcacgattttcggcttgctgggcaagttttcaggataaggttg 80912  T
Q  144 gtc------------gtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattctttgacccat 231  Q
    |||            ||||||||||||||||||||||||||||||||| ||| |||||||||||||| | ||||||||||||| ||||||||| ||||||    
T  80911 gtcgtaccttgggtcgtacgcaccaaacgtgtcacgatttgggaaatcgtgacacgattttgtccggatctgaacacaatataagcattctttcacccat 80812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 27 - 231
Target Start/End: Original strand, 193035 - 193251
Alignment:
Q  27 cgtgtcatgaattatgaaggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag 126  Q
    ||||||| || || ||||||||||||||||| |||||||| ||||||||  |||||| ||||||||||||||||| || ||||||||||| |||||||||    
T  193035 cgtgtcacgatttttgaaggcagtgagcatggtttgcagggtgtccaatcatgacacaattttggaaaaacgtgataccattttcggcttgctgggcaag 193134  T
Q  127 ttttcagaataaggtt------------ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatata 214  Q
    |||| || ||||| ||            |||||||||||||||||||||| |||||||||||||| ||| |||||||||||||| | |||||||||||||    
T  193135 tttttaggataagattggtcgtaccttgggtcgtacgcaccaaacgtgtcgcgatttgggaaatcgtgacacgattttgtccggatctgaacacaatata 193234  T
Q  215 tgcattctttgacccat 231  Q
     | ||||||||||||||    
T  193235 agtattctttgacccat 193251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 49 - 229
Target Start/End: Complemental strand, 37033792 - 37033600
Alignment:
Q  49 gtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggt--- 145  Q
    ||||||||| |||||||| |||||||| ||||||||||||| |  |||| |||||||||||||| ||| | |||||||||||||| |||||||||||       
T  37033792 gtgagcatgttttgcagggtgtccaatcgtgacacgattttcgggaaacatgacacgattttcgccttgcagggcaagttttcaggataaggttggttgt 37033693  T
Q  146 ---------cgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattctttgaccc 229  Q
             |||||||||||||||||||||||||||||||||| ||| || ||||||||||| | ||||||||||||| ||||||||||||||    
T  37033692 accttgggtcgtacgcaccaaacgtgtcacgatttgggaaatcgtgacacaattttgtccggatctgaacacaatataagcattctttgaccc 37033600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 11348174 - 11348265
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||| |||| ||| |||||||||||||||| |||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||    
T  11348174 tttgcagggtgtctaatcgtgacacgattttggagaaacgtgacacgattttcggcttgttgggcaagttttcaggataaggttggtcgtac 11348265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 59 - 150
Target Start/End: Complemental strand, 37879604 - 37879513
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||| ||  |||| |||||||||||||||||||| |||||||||||||| ||||||||| |||||||| || ||||||||||||||||    
T  37879604 tttgcagggtgctcaatcgtgacacgattttggaaaaatgtgacacgattttcagcttactggacaagtttttaggataaggttggtcgtac 37879513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 150
Target Start/End: Original strand, 44454841 - 44454923
Alignment:
Q  68 tgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||| |||||||||||||||  ||||||||||||||||||||||| |||||||||||||||  ||||||||||| ||||    
T  44454841 tgtccaatcgtgacacgattttggggaaacgtgacacgattttcggcttgctgggcaagttttcaagataaggttggttgtac 44454923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 10924908 - 10924983
Alignment:
Q  71 ccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtc 146  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||  | |||||||||||| ||||| |||||||    
T  10924908 ccaatcgtgacacgattttggaaaaatgtgacacgattttcggcttggtaggcaagttttcaaaataaagttggtc 10924983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 31658911 - 31659002
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||| || ||||| ||||||||||||||| |||||||||||| |||||  |||| ||||| |||||||||| ||||||||||| ||||    
T  31658911 tttgcagggtgcccaatcgtgacacgattttgggaaaacgtgacacaattttttgcttgctgggaaagttttcaggataaggttggttgtac 31659002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 146
Target Start/End: Original strand, 49918022 - 49918109
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtc 146  Q
    |||||||| || ||||| ||||||||||||| ||||||||||||||||||||   ||| ||||||| |||||||| ||||||||||||    
T  49918022 tttgcagggtgcccaatcgtgacacgattttcgaaaaacgtgacacgatttttaacttgctgggcacgttttcaggataaggttggtc 49918109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 20762354 - 20762436
Alignment:
Q  69 gtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    ||||||| ||||||||||||||| ||| |||||||||||||| |||||  |||||||| ||||||| ||||||||||||||||    
T  20762354 gtccaatcgtgacacgattttgggaaatcgtgacacgatttttggcttgttgggcaagattttcaggataaggttggtcgtac 20762436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 3189033 - 3189113
Alignment:
Q  69 gtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgt 148  Q
    ||||||| ||||||| ||||||| |||||||||||||||||||| ||| ||||||||| |||| || ||||||||||||||    
T  3189033 gtccaatcgtgacacaattttgggaaaacgtgacacgattttcgacttgctgggcaagttttttaggataaggttggtcgt 3189113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 3197850 - 3197930
Alignment:
Q  69 gtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgt 148  Q
    ||||||| ||||||| ||||||| |||||||||||||||||||| ||| ||||||||| |||| || ||||||||||||||    
T  3197850 gtccaatcgtgacacaattttgggaaaacgtgacacgattttcgacttgctgggcaagttttttaggataaggttggtcgt 3197930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 3206668 - 3206748
Alignment:
Q  69 gtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgt 148  Q
    ||||||| ||||||| ||||||| |||||||||||||||||||| ||| ||||||||| |||| || ||||||||||||||    
T  3206668 gtccaatcgtgacacaattttgggaaaacgtgacacgattttcgacttgctgggcaagttttttaggataaggttggtcgt 3206748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 143 - 231
Target Start/End: Complemental strand, 13547706 - 13547618
Alignment:
Q  143 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattctttgacccat 231  Q
    ||||||||||||||| ||||||||||||||||||| ||| | ||||||||  |||| | ||||||| | ||||||||| ||||||||||    
T  13547706 ggtcgtacgcaccaaccgtgtcacgatttgggaaaacataacacgattttacccggatctgaacactacatatgcattttttgacccat 13547618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 143 - 231
Target Start/End: Complemental strand, 13549617 - 13549529
Alignment:
Q  143 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattctttgacccat 231  Q
    ||||||||||||||| ||||||||||||||||||| ||| | ||||||||  |||| | ||||||| | ||||||||| ||||||||||    
T  13549617 ggtcgtacgcaccaaccgtgtcacgatttgggaaaacataacacgattttacccggatctgaacactacatatgcattttttgacccat 13549529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 28220737 - 28220665
Alignment:
Q  45 ggcagtgagca-tgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggctt 116  Q
    ||||||||||| || |||||||| || ||||| ||||||||||||||| ||||||||||||||||||||||||    
T  28220737 ggcagtgagcactgttttgcagggtgcccaatcgtgacacgattttgggaaaacgtgacacgattttcggctt 28220665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 28223917 - 28223860
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggctt 116  Q
    |||||||| || ||||| ||||||||||||||| ||||||||||||||||||||||||    
T  28223917 tttgcagggtgcccaatcgtgacacgattttgggaaaacgtgacacgattttcggctt 28223860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 3156540 - 3156631
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||| || | ||| ||||||||||||||| ||||| | |||||||||| || || |||| || |||||||| ||||||||||||||||    
T  3156540 tttgcagggtgccaaatcgtgacacgattttgggaaaacataacacgatttttggtttgctggacacgttttcaggataaggttggtcgtac 3156631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 37879486 - 37879440
Alignment:
Q  185 acgattttgtccgggtatgaacacaatatatgcattctttgacccat 231  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||    
T  37879486 acgattttgtccggatctgaacacaatatatgcattctttgacccat 37879440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 193
Target Start/End: Complemental strand, 30476905 - 30476797
Alignment:
Q  97 cgtgacacgattttcggcttactgggcaagttttcagaataaggttggt------------cgtacgcaccaaacgtgtcacgatttgggaaatcatgat 184  Q
    ||||||||||||||||| || |||||||||||||||  |||||||||||            ||||| |||||||||||||||||||||||||| | |||     
T  30476905 cgtgacacgattttcggtttgctgggcaagttttcaagataaggttggttgaaccttgggtcgtacacaccaaacgtgtcacgatttgggaaaacgtgac 30476806  T
Q  185 acgattttg 193  Q
    |||||||||    
T  30476805 acgattttg 30476797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 193
Target Start/End: Original strand, 1833194 - 1833341
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggca-agttttcagaataaggttggtc----------- 146  Q
    ||||||| ||||||||| ||||||||||||||| ||||| | |||||||||| ||||| ||| | | | ||||||  ||||||||||||               
T  1833194 tttgcagattgtccaatggtgacacgattttgggaaaacataacacgatttttggcttgctgagtacatttttcaagataaggttggtcataccttgggt 1833293  T
Q  147 -gtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 193  Q
     |||||||||||||||||||||||||| |||| | ||| |||||||||    
T  1833294 tgtacgcaccaaacgtgtcacgatttgcgaaaacgtgacacgattttg 1833341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 13316776 - 13316722
Alignment:
Q  97 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    |||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  13316776 cgtgacacgatttttggcttgctgggcaagattttcaggataaggttggtcgtac 13316722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 29135841 - 29135887
Alignment:
Q  185 acgattttgtccgggtatgaacacaatatatgcattctttgacccat 231  Q
    |||||||||||||| | ||||||||||||| ||||||||||||||||    
T  29135841 acgattttgtccggatctgaacacaatataagcattctttgacccat 29135887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 149
Target Start/End: Complemental strand, 4553153 - 4553053
Alignment:
Q  49 gtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgt 148  Q
    |||| |||| |||||||| | |||||| ||||||||||||||  ||||||||| | |||||||| |||  | | || |||||||| |||||||| |||||    
T  4553153 gtgaacatgttttgcagggtatccaatcgtgacacgattttgagaaaacgtgatatgattttcgacttgtttgacacgttttcaggataaggttagtcgt 4553054  T
Q  149 a 149  Q
    |    
T  4553053 a 4553053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 29135762 - 29135814
Alignment:
Q  98 gtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||| ||||||| |||| ||||||| |||||||| ||||||||||||||||    
T  29135762 gtgacatgattttcagcttgctgggcacgttttcaggataaggttggtcgtac 29135814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 28223820 - 28223770
Alignment:
Q  143 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 193  Q
    |||||||||||| ||||||||||| |||||||||| | ||| |||||||||    
T  28223820 ggtcgtacgcacaaaacgtgtcacaatttgggaaaacgtgacacgattttg 28223770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 173
Target Start/End: Original strand, 31659007 - 31659037
Alignment:
Q  143 ggtcgtacgcaccaaacgtgtcacgatttgg 173  Q
    |||||||||||||||||||||||||||||||    
T  31659007 ggtcgtacgcaccaaacgtgtcacgatttgg 31659037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 13547763 - 13547711
Alignment:
Q  97 cgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||| |||||| |||| ||||||| ||||||| |||||||||||||||||    
T  13547763 cgtgacacaattttcagcttgctgggcacgttttca-aataaggttggtcgtac 13547711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 13549674 - 13549622
Alignment:
Q  97 cgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||| |||||| |||| ||||||| ||||||| |||||||||||||||||    
T  13549674 cgtgacacaattttcagcttgctgggcacgttttca-aataaggttggtcgtac 13549622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 171
Target Start/End: Original strand, 29135819 - 29135847
Alignment:
Q  143 ggtcgtacgcaccaaacgtgtcacgattt 171  Q
    |||||||||||||||||||||||||||||    
T  29135819 ggtcgtacgcaccaaacgtgtcacgattt 29135847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 29652359 - 29652307
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaa 96  Q
    |||||||||||||| |||||||| ||  |||| ||| ||||||||||||||||    
T  29652359 aggcagtgagcatggtttgcagggtgctcaatcgtgtcacgattttggaaaaa 29652307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 59 - 193
Target Start/End: Complemental strand, 42428913 - 42428779
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtacgcaccaaa 158  Q
    |||||||| |||||||| ||||||||||||||| |||||||||||||||||| ||||| ||||||||||||| || ||||||||||||||||||||||||    
T  42428913 tttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgatttttggcttgctgggcaagtttttaggataaggttggtcgtacgcaccaaa 42428814  T
Q  159 cgtgtcacgatttgggaaatcatgatacgattttg 193  Q
    ||||||||||||| ||||| | ||| |||||||||    
T  42428813 cgtgtcacgatttaggaaaacctgacacgattttg 42428779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 97 - 193
Target Start/End: Original strand, 533492 - 533588
Alignment:
Q  97 cgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 193  Q
    ||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||    
T  533492 cgtgacacggttttcggcttgctgggcaagttttcaggataaggttggtcgtacgcaccaaacgtgtcacgatttgggaaaacgtgacacgattttg 533588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 143 - 229
Target Start/End: Original strand, 27015083 - 27015169
Alignment:
Q  143 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattctttgaccc 229  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| | ||||||||||||||||||||| ||||||    
T  27015083 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcgtgacacgattttgtccggatctgaacacaatatatgcattctatgaccc 27015169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 42426745 - 42426639
Alignment:
Q  45 ggcagtgagcatgattt-gcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttg 143  Q
    ||||||||||||| ||| ||||| |||||||| ||||||||||||||| |||||||||||| |||||||| || |||||||||||||||| |||||||||    
T  42426745 ggcagtgagcatggttttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacacaattttcggtttgctgggcaagttttcaggataaggttg 42426646  T
Q  144 gtcgtac 150  Q
    |||||||    
T  42426645 gtcgtac 42426639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 38746556 - 38746640
Alignment:
Q  143 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattctttgac 227  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||||    
T  38746556 ggtcgtacgcaccaaacgtgtcacaatttgggaaatcatgacacgattttgttcggatctgaacacaatatatgcattctttgac 38746640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 193
Target Start/End: Complemental strand, 30683394 - 30683268
Alignment:
Q  68 tgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtacgcaccaaacgtgtcacg 167  Q
    |||||||| ||||||| ||||||| |||||||||||||||||||| ||| || ||||||||||||| ||||||||||||||||||| ||| |||| |||     
T  30683394 tgtccaatcgtgacacaattttgggaaaacgtgacacgattttcgacttgctaggcaagttttcaggataaggttggtcgtacgcatcaatcgtgacaca 30683295  T
Q  168 a-tttgggaaatcatgatacgattttg 193  Q
    | ||||||||| | ||| |||||||||    
T  30683294 attttgggaaaacgtgacacgattttg 30683268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 44 - 150
Target Start/End: Original strand, 32636481 - 32636588
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggtt 142  Q
    ||||||||| |||| |||||| | |||||||| ||||||||||||||| |||||||| ||||||||||| ||| ||||||||| ||||||| ||||||||    
T  32636481 aggcagtgaacatgttttgcaaggtgtccaatcgtgacacgattttgggaaaacgtggcacgattttcgacttgctgggcaagtttttcaggataaggtt 32636580  T
Q  143 ggtcgtac 150  Q
    ||||||||    
T  32636581 ggtcgtac 32636588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 38746456 - 38746535
Alignment:
Q  72 caattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtacg 151  Q
    |||| |||||||  ||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||    
T  38746456 caatcgtgacacatttttggaaaaacgtgacacgattttcggcttgctggacaagttttcaggataaggttggtcgtacg 38746535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 150
Target Start/End: Original strand, 5057489 - 5057595
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttg 143  Q
    ||||| |||||||  ||| |||| |||||||| ||||||||||||||| |||||||||||| ||||||| |||  || |||||||||||| |||||||||    
T  5057489 aggcaatgagcatagttttcagggtgtccaatcgtgacacgattttggtaaaacgtgacacaattttcgacttgttgagcaagttttcaggataaggttg 5057588  T
Q  144 gtcgtac 150  Q
    |||||||    
T  5057589 gtcgtac 5057595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 150
Target Start/End: Original strand, 37438802 - 37438910
Alignment:
Q  43 aaggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggt 141  Q
    ||||||||||||||| ||| |||  |||||||| |||||| |||||||| |||||||||||||||||| |||||  |||||||| ||||||| |||||||    
T  37438802 aaggcagtgagcatggttttcagagtgtccaatcgtgacatgattttgggaaaacgtgacacgatttttggcttgttgggcaagattttcaggataaggt 37438901  T
Q  142 tggtcgtac 150  Q
    | |||||||    
T  37438902 ttgtcgtac 37438910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 13487891 - 13487967
Alignment:
Q  72 caattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||| ||||||||||||||| |||||    ||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  13487891 caatcgtgacacgattttgggaaaacag--cacgattttcggcttgctgggcaagttttcaggataaggttggtcgtac 13487967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 213006 - 213068
Alignment:
Q  48 agtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgatttt 110  Q
    |||||||||| ||||||||  ||||||| ||||||||||||||| ||||||||||||||||||    
T  213006 agtgagcatggtttgcagggcgtccaatcgtgacacgattttgggaaaacgtgacacgatttt 213068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 150
Target Start/End: Original strand, 40146707 - 40146813
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttg 143  Q
    ||||||||| |||| ||| |||| |||||||| ||||||||||||||| |||| ||||| |||||||| ||||  ||| || |||||||| | || ||||    
T  40146707 aggcagtgaacatggttttcagggtgtccaatcgtgacacgattttgggaaaatgtgactcgattttcagcttgttggtcacgttttcaggaaaaagttg 40146806  T
Q  144 gtcgtac 150  Q
    |||||||    
T  40146807 gtcgtac 40146813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 535614 - 535667
Alignment:
Q  97 cgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||||||||||||||| |||| ||||||||||| ||||||||||||||||    
T  535614 cgtgacacgattttcggcttgctggacaagttttcaggataaggttggtcgtac 535667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 13239438 - 13239516
Alignment:
Q  72 caattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||| |||||| ||||||||  |||||||||||||| || | ||| |||| ||||||||||| ||||||||||||||||    
T  13239438 caatcgtgacaagattttgggtaaacgtgacacgatctttgacttgctggacaagttttcaggataaggttggtcgtac 13239516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 5057598 - 5057665
Alignment:
Q  141 ttggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacac 208  Q
    ||||||||||||| ||| |||||||| |||||||||| | ||| |||||||||||||| | |||||||    
T  5057598 ttggtcgtacgcatcaaccgtgtcacaatttgggaaaacgtgacacgattttgtccggatctgaacac 5057665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 150
Target Start/End: Original strand, 12083731 - 12083838
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggtt 142  Q
    |||||||||||||| ||| |||| ||  |||||||| |||  |||||| |||||||||||||||||||   |||  |||| | |||||||| ||||||||    
T  12083731 aggcagtgagcatggtttacagggtgctcaattgtgtcacagttttgggaaaacgtgacacgattttcaaacttgttgggtacgttttcaggataaggtt 12083830  T
Q  143 ggtcgtac 150  Q
    ||||||||    
T  12083831 ggtcgtac 12083838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 13342771 - 13342825
Alignment:
Q  97 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    |||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  13342771 cgtgacacgatttttggcttgctgggcaagattttcaggataaggttggtcgtac 13342825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 177
Target Start/End: Original strand, 13487972 - 13488006
Alignment:
Q  143 ggtcgtacgcaccaaacgtgtcacgatttgggaaa 177  Q
    |||||||||||||||||||||||||||||||||||    
T  13487972 ggtcgtacgcaccaaacgtgtcacgatttgggaaa 13488006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 19806175 - 19806225
Alignment:
Q  143 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 193  Q
    |||||||||||||||||||||||||| |||||||| | ||| |||||||||    
T  19806175 ggtcgtacgcaccaaacgtgtcacgacttgggaaaacgtgacacgattttg 19806225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 25412472 - 25412526
Alignment:
Q  97 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    |||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  25412472 cgtgacacgatttttggcttgctgggcaagattttcaggataaggttggtcgtac 25412526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 19806117 - 19806170
Alignment:
Q  97 cgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||||||||||||||| || |||| ||||| || ||||||||||||||||    
T  19806117 cgtgacacgattttcggcttgctaggcacgtttttaggataaggttggtcgtac 19806170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 39468989 - 39468936
Alignment:
Q  97 cgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||||||||||||||| |||| || ||||| || ||||||||||||||||    
T  39468989 cgtgacacgattttcggcttgctggacacgtttttaggataaggttggtcgtac 39468936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 3076032 - 3075976
Alignment:
Q  135 ataaggttggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattt 191  Q
    ||||||||||||||||||| |||  |||||||||||||| ||||| ||| |||||||    
T  3076032 ataaggttggtcgtacgcatcaactgtgtcacgatttggcaaatcgtgacacgattt 3075976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 11916525 - 11916592
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc 111  Q
    ||||||||||  || |||||||| ||  |||| ||| ||||||||||| |||||||||||||||||||    
T  11916525 aggcagtgagtgtggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttc 11916592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 28751077 - 28751027
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattt 109  Q
    |||||||| ||| |||| ||||||||||||||| |||||||||||| ||||    
T  28751077 tttgcagggtgttcaatcgtgacacgattttgggaaaacgtgacacaattt 28751027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 30182302 - 30182352
Alignment:
Q  101 acacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    |||||||||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  30182302 acacgatttttggcttgctgggcaagattttcaggataaggttggtcgtac 30182352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 15464984 - 15464935
Alignment:
Q  124 aagttttcagaataaggttggtcgtacgcaccaaacgtgtcacgatttgg 173  Q
    |||||||||| ||||||||||||||||| | ||| |||| ||||||||||    
T  15464984 aagttttcaggataaggttggtcgtacgtatcaatcgtgacacgatttgg 15464935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 177
Target Start/End: Original strand, 32636598 - 32636627
Alignment:
Q  148 tacgcaccaaacgtgtcacgatttgggaaa 177  Q
    ||||||||||||||||||||||||||||||    
T  32636598 tacgcaccaaacgtgtcacgatttgggaaa 32636627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 9352903 - 9352995
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcgg-cttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||| |||| ||| ||| ||||||| ||  ||| |||||||||||||||   ||| ||||  |||||||||| ||||||||||||||||    
T  9352903 tttgcagggtgtcaaatcgtggcacgattctgtgaaatcgtgacacgattttcaaacttgctggttaagttttcaggataaggttggtcgtac 9352995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 44 - 177
Target Start/End: Original strand, 39284554 - 39284688
Alignment:
Q  44 aggcagtgagcatgattt-gcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt 142  Q
    |||||||||||||| ||| ||||| ||||| || ||||||||||||||| |||||||||||| ||||||||||| ||||| |||||||||| ||||||||    
T  39284554 aggcagtgagcatggtttcgcagggtgtcctatcgtgacacgattttgggaaaacgtgacacaattttcggcttgctgggaaagttttcaggataaggtt 39284653  T
Q  143 ggtcgtacgcaccaaacgtgtcacgatttgggaaa 177  Q
    |||||||||||||||| ||||||||||||||||||    
T  39284654 ggtcgtacgcaccaaatgtgtcacgatttgggaaa 39284688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 63 - 177
Target Start/End: Original strand, 29867556 - 29867671
Alignment:
Q  63 caggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtacgcaccaaacgt 161  Q
    |||| |||||||| ||||||||||||||| |||||||||||||||||||| ||| ||||||||| ||||||  ||||||||||| |||||||||||||||    
T  29867556 cagggtgtccaatcgtgacacgattttgggaaaacgtgacacgattttcgacttgctgggcaagtttttcaagataaggttggttgtacgcaccaaacgt 29867655  T
Q  162 gtcacgatttgggaaa 177  Q
    ||||||||||||||||    
T  29867656 gtcacgatttgggaaa 29867671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 59 - 150
Target Start/End: Complemental strand, 2837339 - 2837248
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||| |||||||| ||||||||||||||| |||||||||||||||||||  ||| ||||| |||||||||| ||||||||||||||||    
T  2837339 tttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgattttcaccttgctgggtaagttttcaggataaggttggtcgtac 2837248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 51 - 150
Target Start/End: Complemental strand, 36318513 - 36318413
Alignment:
Q  51 gagcatgatttgcaggttgtccaattgtgacacgatttt-ggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgta 149  Q
    ||||||| |||||||| |||||||| ||||||||||||| ||  ||||||||||||||||||||||| |||| || |||||||| |||||||||||||||    
T  36318513 gagcatgttttgcagggtgtccaatcgtgacacgatttttggggaaacgtgacacgattttcggcttgctggccacgttttcaggataaggttggtcgta 36318414  T
Q  150 c 150  Q
    |    
T  36318413 c 36318413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 150
Target Start/End: Complemental strand, 36988567 - 36988479
Alignment:
Q  63 caggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    |||| |||||||| |||||| |||||||| |||||||||||||||||||| ||| ||||||||| ||||||| ||||||||||||||||    
T  36988567 cagggtgtccaatcgtgacatgattttgggaaaacgtgacacgattttcgacttgctgggcaagtttttcaggataaggttggtcgtac 36988479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 208
Target Start/End: Complemental strand, 35447611 - 35447436
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt- 142  Q
    |||||||||||||  ||| |||| ||| ||||||| |||||||||||| |||| ||||||||||| |||| ||   |||||||||||||  ||||||||     
T  35447611 aggcagtgagcattgttttcagggtgttcaattgtaacacgattttgggaaaatgtgacacgattatcggtttgtcgggcaagttttcaagataaggttg 35447512  T
Q  143 -----------ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacac 208  Q
               |||||||||||||||||||||||||| |||||||||| ||| |||||||||||||| | |||||||    
T  35447511 ctcgtaccttgggtcgtacgcaccaaacgtgtcacga-ttgggaaatcgtgacacgattttgtccggatctgaacac 35447436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 170
Target Start/End: Complemental strand, 6595486 - 6595378
Alignment:
Q  63 caggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtacgcaccaaacgt 161  Q
    |||| |||||||| ||||||| ||||||| |||||||||||||||||| ||||| |||||| || ||||||| |||||||| |||||||||| ||| | |    
T  6595486 cagggtgtccaatcgtgacacaattttgggaaaacgtgacacgatttttggcttgctgggctagattttcaggataaggttagtcgtacgcatcaatctt 6595387  T
Q  162 gtcacgatt 170  Q
    | |||||||    
T  6595386 gacacgatt 6595378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 150
Target Start/End: Original strand, 33528177 - 33528284
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggtt 142  Q
    |||||||||||||| |||||||| ||  |||| ||| ||||||||||| |||||||||||||||||||   ||| ||||| | |||||||||||||||||    
T  33528177 aggcagtgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttcaaacttgctgggtacgttttcagaataaggtt 33528276  T
Q  143 ggtcgtac 150  Q
    | ||||||    
T  33528277 gatcgtac 33528284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 148
Target Start/End: Original strand, 17863849 - 17863955
Alignment:
Q  43 aaggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggt 141  Q
    ||||||||||||||| ||| |||| |||||||| ||||||  ||||||| ||||||||||||||||||   ||| ||||||||| |||| || |||||||    
T  17863849 aaggcagtgagcatggttttcagggtgtccaatcgtgacataattttgggaaaacgtgacacgattttttacttgctgggcaagtttttgaggataaggt 17863948  T
Q  142 tggtcgt 148  Q
    |||||||    
T  17863949 tggtcgt 17863955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 44 - 110
Target Start/End: Original strand, 45726464 - 45726530
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgatttt 110  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||  ||| |||||||||||||    
T  45726464 aggcagtgagcatgattttcagggtgtccaattgtgacacgattttgggcaaatgtgacacgatttt 45726530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 150
Target Start/End: Complemental strand, 34389375 - 34389287
Alignment:
Q  63 caggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||| |||||||| ||||||||||||||| |||||||||||||||||||   ||| ||||| | |||||||| ||||||||||||||||    
T  34389375 cagggtgtccaatcgtgacacgattttgggaaaacgtgacacgattttcaaacttgctgggtacgttttcaggataaggttggtcgtac 34389287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 150
Target Start/End: Original strand, 45099436 - 45099519
Alignment:
Q  68 tgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    |||||||| ||||||| ||||||| |||  ||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  45099436 tgtccaatcgtgacacaattttgggaaattgtgacacgatttttggcttgctgggcaagattttcaggataaggttggtcgtac 45099519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 150
Target Start/End: Original strand, 14698563 - 14698669
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttg 143  Q
    |||||||||||||||||| | || ||| || | ||  ||||||||||| |||||||||||||||||||  |||  ||||||  ||||||| |||||||||    
T  14698563 aggcagtgagcatgattttctggatgttcattcgtatcacgattttgggaaaacgtgacacgattttcaacttgttgggcacattttcaggataaggttg 14698662  T
Q  144 gtcgtac 150  Q
    |||||||    
T  14698663 gtcgtac 14698669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 20522737 - 20522659
Alignment:
Q  72 caattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||| ||| ||||||||||  |||||||||||||||||||  ||| ||||||| |||||||| ||||||||||||||||    
T  20522737 caatcgtgtcacgattttgagaaaacgtgacacgattttcaacttgctgggcacgttttcaggataaggttggtcgtac 20522659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 21630460 - 21630382
Alignment:
Q  72 caattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||| ||| ||| ||||||| ||||| |||||||||||||  ||| ||||||| |||||||| ||||||||||||||||    
T  21630460 caatcgtgtcacaattttgggaaaacatgacacgattttcaacttgctgggcacgttttcaggataaggttggtcgtac 21630382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 149
Target Start/End: Original strand, 23078025 - 23078131
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggtt 142  Q
    ||||||||||||||  ||| ||| ||  |||||||| ||||||||||| |||||||||||||||||||   |||  |||| | |||||||| ||||||||    
T  23078025 aggcagtgagcatggattgtagggtgctcaattgtgtcacgattttgggaaaacgtgacacgattttcaaacttgttgggtacgttttcaggataaggtt 23078124  T
Q  143 ggtcgta 149  Q
    |||||||    
T  23078125 ggtcgta 23078131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 13569874 - 13569807
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc 111  Q
    |||||||||||||| |||||||| ||  |||| ||| ||  |||||||||||||||||||||||||||    
T  13569874 aggcagtgagcatggtttgcagggtgctcaatcgtgtcataattttggaaaaacgtgacacgattttc 13569807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 2334875 - 2334821
Alignment:
Q  97 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    |||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  2334875 cgtgacacgatttttggcttgctgggcaagattttcaggataaggttggtcgtac 2334821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 4503590 - 4503536
Alignment:
Q  97 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    |||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  4503590 cgtgacacgatttttggcttgctgggcaagattttcaggataaggttggtcgtac 4503536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 8389703 - 8389768
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc 111  Q
    |||||||||| |||||||||||| ||| |  | ||| ||||||||||| |||||||||||||||||||    
T  8389703 aggcagtgagtatgatttgcagggtgttc--tcgtgtcacgattttgggaaaacgtgacacgattttc 8389768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 10706834 - 10706873
Alignment:
Q  72 caattgtgacacgattttggaaaaacgtgacacgattttc 111  Q
    |||||||| ||||||||||| |||||||||||||||||||    
T  10706834 caattgtgtcacgattttgggaaaacgtgacacgattttc 10706873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 5723712 - 5723658
Alignment:
Q  97 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    |||||||||||||| ||||| |||| |||| ||||||| ||||||||||||||||    
T  5723712 cgtgacacgatttttggcttgctggacaagattttcaggataaggttggtcgtac 5723658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 17865684 - 17865614
Alignment:
Q  81 cacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    ||||||||||| |||| ||||||||||||||   ||| ||||| | |||||||| ||||||||||||||||    
T  17865684 cacgattttgggaaaatgtgacacgattttcaaacttgctgggtacgttttcaggataaggttggtcgtac 17865614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 33118567 - 33118517
Alignment:
Q  143 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 193  Q
    ||||||||||||||| |||||||||||||||  || ||||| |||||||||    
T  33118567 ggtcgtacgcaccaatcgtgtcacgatttggacaaacatgacacgattttg 33118517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 36206123 - 36206069
Alignment:
Q  97 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    |||||||||||||| ||||| ||||| ||| ||||||| ||||||||||||||||    
T  36206123 cgtgacacgatttttggcttgctgggaaagattttcaggataaggttggtcgtac 36206069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 2334804 - 2334767
Alignment:
Q  72 caattgtgacacgattttggaaaaacgtgacacgattt 109  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  2334804 caatcgtgacacgatttgggaaaaacgtgacacgattt 2334767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 28258746 - 28258838
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcgg-cttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||| |||| ||| ||| ||| ||||||  ||| |||||||||||||||   ||| ||||  |||||||||| ||||||||||||||||    
T  28258746 tttgcagggtgtcaaatcgtggcacaattttgtgaaatcgtgacacgattttcaaacttgctggttaagttttcaggataaggttggtcgtac 28258838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 20920 - 20819
Alignment:
Q  49 gtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgt 148  Q
    ||||||||| |||||||| ||||||||  |||||||||||||| ||||||||||||||||||||||||  |||| ||||||| |||||||||||||||||    
T  20920 gtgagcatgttttgcagggtgtccaatcatgacacgattttgggaaaacgtgacacgattttcggcttgttgggaaagtttttagaataaggttggtcgt 20821  T
Q  149 ac 150  Q
    ||    
T  20820 ac 20819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 71 - 231
Target Start/End: Complemental strand, 3809407 - 3809238
Alignment:
Q  71 ccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac------------gcaccaaa 158  Q
    ||||| |||||||||||||||  |||||||||||||||||||||||   ||| |||||||||| ||||||||||||||||            | ||||||    
T  3809407 ccaatcgtgacacgattttggggaaacgtgacacgattttcggctt---gggaaagttttcaggataaggttggtcgtaccttgggtcgtacgtaccaaa 3809311  T
Q  159 cgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattctttgacccat 231  Q
     |||||| ||||||||||||| |||||||||||||||||| | |||||||| |||| ||||||||||||||||    
T  3809310 tgtgtcatgatttgggaaatcgtgatacgattttgtccggatctgaacacattataagcattctttgacccat 3809238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 48 - 208
Target Start/End: Original strand, 21593110 - 21593282
Alignment:
Q  48 agtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcg 147  Q
    |||||||||| ||| |||| |||||||| ||||||| ||||||| |||||||||||||||||||||||| ||||||| ||||| || |||||||||||||    
T  21593110 agtgagcatggttttcagggtgtccaatcgtgacacaattttgggaaaacgtgacacgattttcggcttgctgggcatgtttttaggataaggttggtcg 21593209  T
Q  148 ta------------cgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacac 208  Q
    ||            || ||||| |||||||||||||||||||   ||| |||||||||||||| |||||||||    
T  21593210 taccttgggtcgttcgtaccaaccgtgtcacgatttgggaaaatgtgacacgattttgtccggatatgaacac 21593282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 68 - 150
Target Start/End: Complemental strand, 9183496 - 9183414
Alignment:
Q  68 tgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||| ||||||||||||||| |||||||||||||||||| | ||| |||||||||||||||| ||||||||||||||||    
T  9183496 tgtccaatcgtgacacgattttgggaaaacgtgacacgatttttgacttgctgggcaagttttcaggataaggttggtcgtac 9183414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 59 - 150
Target Start/End: Complemental strand, 22964226 - 22964135
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||| ||| |||| |||| |||||||||| |||||||||||||||||| ||||| |||| ||||||||||| ||||||||||||||||    
T  22964226 tttgcagggtgttcaatcgtgatacgattttgggaaaacgtgacacgatttttggcttgctggacaagttttcaggataaggttggtcgtac 22964135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 23824167 - 23824258
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||| ||| |||| |||| |||||||||| |||||||||||||||||| ||||| |||| ||||||||||| ||||||||||||||||    
T  23824167 tttgcagggtgttcaatcgtgatacgattttgggaaaacgtgacacgatttttggcttgctggacaagttttcaggataaggttggtcgtac 23824258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 603719 - 603642
Alignment:
Q  72 caattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgta 149  Q
    |||| ||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||| ||||||||| |||||    
T  603719 caatcgtgacacgattttgggaaaacgtgacatgattttcggcttgctgggcaagttttcaggataaggttgatcgta 603642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 150
Target Start/End: Complemental strand, 31980061 - 31979954
Alignment:
Q  44 aggcagtgagcatgatttg-caggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt 142  Q
    |||||||||||||| |||  |||| ||  |||| ||| |||||||||||||||||||||||| ||||||  ||| ||||||| |||||||| ||||||||    
T  31980061 aggcagtgagcatggtttttcagggtgatcaatcgtgtcacgattttggaaaaacgtgacacaattttcaacttgctgggcacgttttcaggataaggtt 31979962  T
Q  143 ggtcgtac 150  Q
    ||||||||    
T  31979961 ggtcgtac 31979954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 150
Target Start/End: Complemental strand, 5407395 - 5407312
Alignment:
Q  68 tgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    |||||||| ||||||||||||||||||| ||||||||  |||| ||||| ||||||||| ||||||  ||||||||||||||||    
T  5407395 tgtccaatcgtgacacgattttggaaaatcgtgacacattttttggcttgctgggcaagattttcaagataaggttggtcgtac 5407312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 150
Target Start/End: Complemental strand, 5411720 - 5411637
Alignment:
Q  68 tgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    |||||||| ||||||||||||||||||| ||||||||  |||| ||||| ||||||||| ||||||  ||||||||||||||||    
T  5411720 tgtccaatcgtgacacgattttggaaaatcgtgacacattttttggcttgctgggcaagattttcaagataaggttggtcgtac 5411637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 31086025 - 31086092
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc 111  Q
    |||||||||||||| |||||||| ||  |||| ||| |||||||||||||||||||||||||||||||    
T  31086025 aggcagtgagcatggtttgcagggtgctcaatcgtgtcacgattttggaaaaacgtgacacgattttc 31086092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 17759428 - 17759494
Alignment:
Q  77 gtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttg 143  Q
    |||||||||||||||  ||||||||||| ||||||||||| |||| ||||||||||| |||||||||    
T  17759428 gtgacacgattttggggaaacgtgacacaattttcggcttgctggacaagttttcaggataaggttg 17759494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 24714872 - 24714809
Alignment:
Q  87 tttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||||||||||||||||||||  ||| ||||||| |||||||| ||||| ||||||||||    
T  24714872 tttggaaaaacgtgacacgattttcaacttgctgggcacgttttcaggataagattggtcgtac 24714809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 5017050 - 5017156
Alignment:
Q  46 gcagtgagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggca-agttttcagaataaggttg 143  Q
    |||||||||||| |||||||| ||  |||| ||| ||||||||||  |||||||||||||||||||   ||||||||| | | ||||||| |||||||||    
T  5017050 gcagtgagcatggtttgcagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaacttactgggtacatttttcaggataaggttg 5017149  T
Q  144 gtcgtac 150  Q
    |||||||    
T  5017150 gtcgtac 5017156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 26661422 - 26661495
Alignment:
Q  77 gtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    ||||||||||||||| |||| |||||| |||||||| ||| |||| |  |||||||| ||||||||||||||||    
T  26661422 gtgacacgattttgggaaaatgtgacaagattttcgacttgctggactcgttttcaggataaggttggtcgtac 26661495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 26767393 - 26767466
Alignment:
Q  77 gtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    ||||||||||||||| |||| |||||| |||||||| ||| |||| |  |||||||| ||||||||||||||||    
T  26767393 gtgacacgattttgggaaaatgtgacaagattttcgacttgctggactcgttttcaggataaggttggtcgtac 26767466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 5413906 - 5413852
Alignment:
Q  97 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    |||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  5413906 cgtgacacgatttttggcttgctgggcaagattttcaggataaggttggtcgtac 5413852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 5571846 - 5571924
Alignment:
Q  72 caattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||| ||| ||||||||||  |||||||||||||||||||  ||| ||||||| ||||| ||  |||||||||||||||    
T  5571846 caatcgtgtcacgattttgagaaaacgtgacacgattttcaacttgctgggcacgtttttaggttaaggttggtcgtac 5571924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 24435566 - 24435632
Alignment:
Q  84 gattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||| |||||||||||||||||||  |||  | |||| |||||||| ||||||||||||||||    
T  24435566 gattttgggaaaacgtgacacgattttcaacttgtttggcacgttttcaggataaggttggtcgtac 24435632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 30834995 - 30834941
Alignment:
Q  97 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    |||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  30834995 cgtgacacgatttttggcttgctgggcaagattttcaggataaggttggtcgtac 30834941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 33160812 - 33160758
Alignment:
Q  97 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    |||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  33160812 cgtgacacgatttttggcttgctgggcaagattttcaggataaggttggtcgtac 33160758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 603610 - 603568
Alignment:
Q  189 ttttgtccgggtatgaacacaatatatgcattctttgacccat 231  Q
    |||||||||| | ||||||||||||| ||||||||||||||||    
T  603610 ttttgtccggatctgaacacaatataagcattctttgacccat 603568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 5406656 - 5406602
Alignment:
Q  97 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    |||||||||||||| ||||| ||||||||| |||| || ||||||||||||||||    
T  5406656 cgtgacacgatttttggcttgctgggcaagatttttaggataaggttggtcgtac 5406602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 5410981 - 5410927
Alignment:
Q  97 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    |||||||||||||| ||||| ||||||||| |||| || ||||||||||||||||    
T  5410981 cgtgacacgatttttggcttgctgggcaagatttttaggataaggttggtcgtac 5410927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 16452898 - 16452844
Alignment:
Q  97 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    |||||||||||||| ||||| ||||| ||| ||||||| ||||||||||||||||    
T  16452898 cgtgacacgatttttggcttgctgggaaagattttcaggataaggttggtcgtac 16452844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 5757047 - 5757139
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcgg-cttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||| |||| ||| |||  |||||||||  ||| |||||||||||||||   ||| ||||  |||||||||| ||||||||||||||||    
T  5757047 tttgcagggtgtcaaatcgtggtacgattttgtgaaatcgtgacacgattttcaaacttgctggttaagttttcaggataaggttggtcgtac 5757139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 51 - 150
Target Start/End: Complemental strand, 17767 - 17668
Alignment:
Q  51 gagcatgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    ||||||| |||||||| |||||||  ||||||||||||||| |||||||||||||||||| ||||| ||||||||| |||||  ||||||||||||||||    
T  17767 gagcatgttttgcagggtgtccaaccgtgacacgattttgggaaaacgtgacacgatttttggcttgctgggcaagctttcatgataaggttggtcgtac 17668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 231
Target Start/End: Original strand, 6878 - 6967
Alignment:
Q  143 ggtcgtacgcaccaaacgtgtcacgatttg-ggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattctttgacccat 231  Q
    ||||||||||||||| | |||||||||||| ||||| | |||||||||||||  ||| |||||||||  |||||||||||||||||||||    
T  6878 ggtcgtacgcaccaaccatgtcacgatttgtggaaaacgtgatacgattttgctcggatatgaacactttatatgcattctttgacccat 6967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 6788 - 6833
Alignment:
Q  44 aggcagtgagcatgatttgcaggttgtccaattgtgacacgatttt 89  Q
    |||||||||||||| |||||||| |||||||| |||||||||||||    
T  6788 aggcagtgagcatggtttgcagggtgtccaatcgtgacacgatttt 6833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 434217 - 434297
Alignment:
Q  72 caattgtgacacgattttggaaaaacgtgacacga-ttttcggcttactgggcaag-ttttcagaataaggttggtcgtac 150  Q
    |||| ||||||||||||||| ||| |||||||||| |||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  434217 caatcgtgacacgattttgggaaatcgtgacacgattttttggcttgctgggcaagattttcaggataaggttggtcgtac 434297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 114269 - 114350
Alignment:
Q  69 gtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggc-aagttttcagaataaggttggtcgtac 150  Q
    |||||||  ||||||||| |||| |||||||||||||||||| ||||| |||||| || ||||||| ||||||||||| ||||    
T  114269 gtccaatcatgacacgatattgggaaaacgtgacacgatttt-ggcttgctgggcaaaattttcaggataaggttggtggtac 114350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 36401 - 36493
Alignment:
Q  59 tttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||||||| |||| ||| ||| ||||||||||  |||||||||||| ||||||   ||| ||||| | |||||||| ||||||||||||||||    
T  36401 tttgcagggtgtcaaatcgtggcacgattttgtgaaaacgtgacacaattttcaaacttgctgggtacgttttcaggataaggttggtcgtac 36493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 150
Target Start/End: Complemental strand, 45730 - 45635
Alignment:
Q  56 tgatttgcaggttgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    ||||||||||| |||| ||| ||| ||||||| ||  ||| |||||||||||||||   ||| ||||  |||||||||| ||||||||||||||||    
T  45730 tgatttgcagggtgtcaaatcgtggcacgattctgtgaaatcgtgacacgattttcaaacttgctggctaagttttcaggataaggttggtcgtac 45635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 3009 - 2930
Alignment:
Q  72 caattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggttggtcgtac 150  Q
    |||| ||| ||||||||||| |||||||||| ||||||||   ||| ||||| | |||||||| ||||||||||||||||    
T  3009 caatcgtgtcacgattttgggaaaacgtgacccgattttcaaacttgctgggtatgttttcaggataaggttggtcgtac 2930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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