View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_418 (Length: 246)
Name: NF11453A_low_418
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_418 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 22738699 - 22738929
Alignment:
| Q |
1 |
aaaatgaaggctatagtttggctatgatgttcgttggggcaaagcttgtcgaatgtctttctcagaagccctggatgtttaagttccaacaggttggtgt |
100 |
Q |
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| T |
22738699 |
aaaatgaaggctatattttggctatgatgtttgttggggcaaagcttgtcgaatgtctttctcagaagcactggatgtttaagttccaacaggttggtgt |
22738798 |
T |
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| Q |
101 |
taggatacaatcaatgttggtatcaataatctatgctaaaggtttgaccctttcgtgtcaatcgaaagagggatacagcagcggtgaaatcatcaactta |
200 |
Q |
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| T |
22738799 |
taggatacaatcaatgttggtgtcaataatctatgctaaaggtttgacccttttgtatcaatcgaaagagggatacagcagcggtgaaatcatcaactta |
22738898 |
T |
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| Q |
201 |
atgactgttgatgctgaaaggataggtgaat |
231 |
Q |
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| T |
22738899 |
atgactgttgatgctgaaaggataggtgaat |
22738929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 5 - 231
Target Start/End: Complemental strand, 22728286 - 22728054
Alignment:
| Q |
5 |
tgaaggctatagtttggctatgatgttcgttggggcaaagcttgtcgaatgtctttctcagaagccctggatgtttaagttccaacaggttggtgttagg |
104 |
Q |
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||||||||||| ||||||||||||||| |||| ||||||||||||||| |||||| |||| || ||||||||||||||||||||||||||||||||| |
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| T |
22728286 |
tgaaggctatattttggctatgatgtttgttgcggcaaagcttgtcgagtgtcttatgcagaggcaatggatgtttaagttccaacaggttggtgttagg |
22728187 |
T |
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| Q |
105 |
atacaatcaatgttggtatcaataatctatgctaaaggtttgaccctttcgtgtcaat------cgaaagagggatacagcagcggtgaaatcatcaact |
198 |
Q |
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| T |
22728186 |
atgcaatcaatgttggtatcaatgatctatgctaaaggtttgaccctttcgtgtcaatcaaaaacgaaagagggacacagcagcggcgaaatcattaact |
22728087 |
T |
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| Q |
199 |
taatgactgttgatgctgaaaggataggtgaat |
231 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
22728086 |
taatgactgttgatgctgtaaggataggtgaat |
22728054 |
T |
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