View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_420 (Length: 246)
Name: NF11453A_low_420
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_420 |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 29660719 - 29660860
Alignment:
| Q |
1 |
atagagtaagtgttttaatttttagaacaaaagataaaataaaagaaatctgttttcataagctagcataaagatcatatggaattaatctggaaacaac |
100 |
Q |
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| T |
29660719 |
atagcgtaagtgtttgaatttttataacaaaagataaaataaaataaatctgttttcataagctagcataaagagcatatggaagtaatctggaaacaac |
29660818 |
T |
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| Q |
101 |
tcatgcatttgtcaaaaactatcttaaacaattccacaagta |
142 |
Q |
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| T |
29660819 |
ccatgcatttgtcaaaaactatctcaaacaattccacaagta |
29660860 |
T |
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Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 139 - 232
Target Start/End: Original strand, 29660908 - 29661001
Alignment:
| Q |
139 |
agtatattcattcgtgtagtgcagtccaatttctaccacctgcttcatggatccaaatctccatctataaattcattgaccacacatgatgtcc |
232 |
Q |
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| T |
29660908 |
agtatattcattcatgtagtgcagtccaatttctaccacctgcttcatggatccaaatctccatctataaattcattgaccacacataatgtcc |
29661001 |
T |
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