View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453A_low_423 (Length: 245)
Name: NF11453A_low_423
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_423 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 23 - 245
Target Start/End: Complemental strand, 36204720 - 36204497
Alignment:
| Q |
23 |
taatacatataatctttaacttttatctccctcattcaaagttataaaattaactaaaaagcattgagagacataattctaaaaacatgcaacaaaa-ct |
121 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
36204720 |
taatacatataatctctaacttttatctccctcattcaaagttataaaattaacaaaaaagcattgagagacataattctaaaaacatgcaacaaaaact |
36204621 |
T |
|
| Q |
122 |
cataataaaaacacaagctttaaataaccctaattatatagtacaagaaagaagtttcaagctaatcatacttagttttacggttgcgacgtttctttgc |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36204620 |
cataataaaaacacaagctttaaataaccctaattatatagtacaagaaagaagtttcaagctaatcatacttagttttacggtttcgacgtttctttgc |
36204521 |
T |
|
| Q |
222 |
agatgggcggcactttttatcttg |
245 |
Q |
| |
|
|||||||| ||||||| ||||||| |
|
|
| T |
36204520 |
agatgggctgcactttatatcttg |
36204497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 38217684 - 38217741
Alignment:
| Q |
60 |
aaagttataaaattaactaaaaagcattgagagacataattctaaaaacatgcaacaaaa |
119 |
Q |
| |
|
|||| |||||||||||| |||||| ||||||| |||||||| ||||||| ||||||||| |
|
|
| T |
38217684 |
aaagatataaaattaacaaaaaagtattgaga--cataattcgaaaaacaagcaacaaaa |
38217741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University