View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_43 (Length: 439)
Name: NF11453A_low_43
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 10 - 433
Target Start/End: Complemental strand, 6318322 - 6317898
Alignment:
| Q |
10 |
gtgttagtttgttgccatttctgaactacagatgaattcaaaaaagcttgttagatt-----gttgcctgcatattcttagagtttaccattcataatcc |
104 |
Q |
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| T |
6318322 |
gtgttagtttgttgccatttctgaactacagatgaattcaaaaaagcttgttagattatattgttgcctgcatattcttagagtttaccattcataatcc |
6318223 |
T |
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| Q |
105 |
ttgttgtacgtgcagctgttgatgacagtaaaattaaattctctccacatcatgaaactgacctacatacgtttgaatttaaggtcatatgtcactatac |
204 |
Q |
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| T |
6318222 |
ttgttgt----gcagctgttgatgacagtaaaattaaattctctccacatgatgaaactgacctacatacgtttgaatttaaggtcatatttcactatac |
6318127 |
T |
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| Q |
205 |
tcccaaacttttatagcctcttggcattcaaacaagatatgtcaatcactttcattttccccttcacaaaaaggacaagaagtttgacattgtacccctc |
304 |
Q |
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| T |
6318126 |
tcccaaacttttatagcctcttggcattcaaacaagatatgtcaatcactttcattttccccttcacaaaaaggacaagaagtttgacattgaacccctc |
6318027 |
T |
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| Q |
305 |
ttgttatgagtttttctctcgtctgcgatcaaccttttttggtactcttaacctccataactttgtccactcccctggttttctcaagtttacataaatc |
404 |
Q |
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| T |
6318026 |
ttgttatgagtttttctctcgtctgcgatcaaccttttttggtactcttaacctccataactttgtccactcccctggttttctcaagtttacataaatc |
6317927 |
T |
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| Q |
405 |
atatgaccatatttcactgatcaagtttc |
433 |
Q |
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| T |
6317926 |
atatgaccatatttcactgatcaagtttc |
6317898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 245
Target Start/End: Complemental strand, 6315104 - 6314954
Alignment:
| Q |
91 |
accattcataatccttgttgtacgtgcagctgttgatgacagtaaaattaaattctctccacatcatgaaactgacc--tacatacgtttgaatttaagg |
188 |
Q |
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||||||||||||| ||||||| |||| ||||||||||||||||| |||||||| ||||| |||||| || || | ||| ||||||||||| ||| |
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| T |
6315104 |
accattcataatcattgttgt----gcagttgttgatgacagtaaaaataaattctg--cacatgatgaaaatgtcccctgcatgcgtttgaatttgagg |
6315011 |
T |
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| Q |
189 |
tcatatgtcactatactcccaaacttttatagcctcttggcattcaaacaagatatg |
245 |
Q |
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| T |
6315010 |
tcataggttactattcccctaagctgttgtagtctcttgccattcaaagaagatatg |
6314954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 241 - 324
Target Start/End: Complemental strand, 55983990 - 55983907
Alignment:
| Q |
241 |
atatgtcaatcactttcattttccccttcacaaaaaggacaagaagtttgacattgtacccctcttgttatgagtttttctctc |
324 |
Q |
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|||||||||||||||||||||||| |||| | ||||||||| ||| |||||||||| ||||||| | ||||||||||||||||| |
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| T |
55983990 |
atatgtcaatcactttcattttcctcttctctaaaaggacatgaaatttgacattgaacccctcgtcttatgagtttttctctc |
55983907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 376
Target Start/End: Complemental strand, 55983861 - 55983824
Alignment:
| Q |
339 |
ttttttggtactcttaacctccataactttgtccactc |
376 |
Q |
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| T |
55983861 |
ttttttggtactcttaacctccacaactttgtccactc |
55983824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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