View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_435 (Length: 244)
Name: NF11453A_low_435
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_435 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 49289513 - 49289736
Alignment:
| Q |
13 |
aatataatcgtttgtactagctagtagtaaaagtggacttaattgatgaatcactttcaatgattttgaacgtgacccaaatatctaatcgacgattctc |
112 |
Q |
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| T |
49289513 |
aatataatcgtttgtactagctagtagtaaaagtggacttaattgatcaatcactttcaatgattttgaaagtgacccaaatatctaatcgacgattctc |
49289612 |
T |
|
| Q |
113 |
cacttttctacttttctttcccaacaacaagccttaatttcttccgttcaaaaaccactatataagcatgcgacgtttggcttattaactcaacaaacaa |
212 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
49289613 |
cacttttctacttttcttttccaacaacaagccttaatttcttcccttcaaaaacccctatataagcatgccacgtttggcttattaactcaacaaacaa |
49289712 |
T |
|
| Q |
213 |
cacaccaaaacttcaagtataact |
236 |
Q |
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|||||||||||||||||||||||| |
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| T |
49289713 |
cacaccaaaacttcaagtataact |
49289736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 49296464 - 49296687
Alignment:
| Q |
13 |
aatataatcgtttgtactagctagtagtaaaagtggacttaattgatgaatcactttcaatgattttgaacgtgacccaaatatctaatcgacgattctc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
49296464 |
aatataatcgtttgtactagctagtagtaaaagtggacttaattgatcaatcactttcaatgattttgaaagtgacccaaacatctaatcgacgattctc |
49296563 |
T |
|
| Q |
113 |
cacttttctacttttctttcccaacaacaagccttaatttcttccgttcaaaaaccactatataagcatgcgacgtttggcttattaactcaacaaacaa |
212 |
Q |
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| T |
49296564 |
cacttttctacttttcttttccaacaacaagccttaatttcttcccttcaaaaacccctatataagcatgccacgtttggcttattaactcaacaaacaa |
49296663 |
T |
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| Q |
213 |
cacaccaaaacttcaagtataact |
236 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
49296664 |
cacaccaaaacttcaagtataact |
49296687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 48 - 236
Target Start/End: Original strand, 49303232 - 49303417
Alignment:
| Q |
48 |
gacttaattgatgaatcactttcaatgattttgaacgtgacccaaatatctaatcgacgattctccacttttctacttttctttcccaacaacaagcctt |
147 |
Q |
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|||||||||||| |||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
49303232 |
gacttaattgatcaatcactttcaacgattttgaaaatgacccaaatatctaatggacgattctccacttttctacttttctttcccaac---aagcctt |
49303328 |
T |
|
| Q |
148 |
aatttcttccgttcaaaaaccactatataagcatgcgacgtttggcttattaactcaacaaacaacacaccaaaacttcaagtataact |
236 |
Q |
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|||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49303329 |
aatttcttcccttcaaaaacccctatataagcatgccacgtttggcttattaactcaacaaacaacacaccaaaacttcaagtataact |
49303417 |
T |
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