View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_443 (Length: 243)
Name: NF11453A_low_443
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_443 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 30573653 - 30573876
Alignment:
| Q |
20 |
tttcagatatcattgtgagatccgttgaggataatattaagggtaaactttttataatatgaatgtaaccatgactagtagtgatatttcttttaatctc |
119 |
Q |
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| T |
30573653 |
tttcagatatcattgtgagatccgttgaggataatattatgggtaaactttttataatatgaatgtaaccatgactagtaatgatatttcttttaatctc |
30573752 |
T |
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| Q |
120 |
tctcacaaaccaaatataaatacactgataaaccattaagcatatgtttggataaacattttcttgcattatatgttatatctactgtgaatttgcagaa |
219 |
Q |
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| T |
30573753 |
tctcacaaaccaaatataaatacactgataaaccattaagcatatgtttggataaacattttcttgcattatatgttatatctactgtgaatttgcagaa |
30573852 |
T |
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| Q |
220 |
gcaacaaaaccaagctttcacatt |
243 |
Q |
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| T |
30573853 |
gcaacaaaaccaagctttcacatt |
30573876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 120 - 243
Target Start/End: Original strand, 30570277 - 30570400
Alignment:
| Q |
120 |
tctcacaaaccaaatataaatacactgataaaccattaagcatatgtttggataaacattttcttgcattatatgttatatctactgtgaatttgcagaa |
219 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30570277 |
tctcacaagccaaatataaatacactaataaaccattaagcatatgtttggataaacattttcttgcattatatgttatatctactgtgaatttgcagaa |
30570376 |
T |
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| Q |
220 |
gcaacaaaaccaagctttcacatt |
243 |
Q |
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| T |
30570377 |
gcaacaaaaccaagctttcacatt |
30570400 |
T |
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