View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_445 (Length: 243)
Name: NF11453A_low_445
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_445 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 45123006 - 45123229
Alignment:
| Q |
20 |
agaacaagataagcaaggttgtttcgtgatctttgcaagaagaacaaggtgattcctccacttatttactttattgcttgacaagtcttgtaggtgacaa |
119 |
Q |
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| T |
45123006 |
agaacaagataaacaaggttgtttcgtgatctttgtaagaagaacaagatgattcctccacttgtttactttattgcttgacaagtcttgtaggtgacaa |
45123105 |
T |
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| Q |
120 |
tattgtttcttgaagtgcaaaacaaacaaagtgatacttatatataagctcgatttctgtatttcaagatgcatcagtcagaaatattttaagtatatat |
219 |
Q |
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| T |
45123106 |
tattgtttcttgaagtgcaagacaaacaaagtgatacctatatataagctcgatttctgtatttcaagatacatcaatcagaaatattttaagtatatat |
45123205 |
T |
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| Q |
220 |
atgaattttatcttttctattata |
243 |
Q |
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| T |
45123206 |
ctgaattttatcttttctattata |
45123229 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 34980546 - 34980595
Alignment:
| Q |
64 |
caaggtgattcctccacttatttactttattgcttgacaagtcttgtagg |
113 |
Q |
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| T |
34980546 |
caaggtgattccttcacttgtttactttcttgcttggcaagtcttgtagg |
34980595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 15549756 - 15549684
Alignment:
| Q |
65 |
aaggtgattcctccacttatttactttattgcttgacaagtcttgtaggtgacaatattgtttcttgaagtgc |
137 |
Q |
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| T |
15549756 |
aaggtggttcattcacttgtttcctttcttgcatgacaagtattgtaggccacaatgttgtttcttgaagtgc |
15549684 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 35397486 - 35397425
Alignment:
| Q |
158 |
tatatataagctcgatttctgtatttcaagatgcatcagtcagaaatattttaagtatatat |
219 |
Q |
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| T |
35397486 |
tatatataaactctctttctttattataagatgcatcagtcagaaacattttaagtttatat |
35397425 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 12467205 - 12467149
Alignment:
| Q |
93 |
ttgcttgacaagtcttgtaggtgacaatattgtttcttgaagtgcaaaacaaacaaa |
149 |
Q |
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| T |
12467205 |
ttgcttgataagttttgtaggccacaagcttgtttcttgaagtgcaagacaaacaaa |
12467149 |
T |
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