View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453A_low_449 (Length: 243)
Name: NF11453A_low_449
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_449 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 17701144 - 17700923
Alignment:
| Q |
1 |
gtgaataatggcggcaccttgaagaagactacaaaaattagttgtgttttttcttcttctcttcacaaccatgatcatgatgatgatgggaaaccgaaga |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17701144 |
gtgaataacggcggcaccttgaagaagactataaaaattacttgtgttttttcttcttctcttcacaaccatgatcatgatgatg---ggaaaccgaaga |
17701048 |
T |
|
| Q |
101 |
accatacatgtgatgtttgtaacaaggtattttcatccaacaatgctttgaagggacatatgagatggcatactccaaagggtttgaagaagggtactat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17701047 |
accatacatgtgatgtttgtaacaaggtatttttatccaacaatgctttgaagggacatatgagatggcatactccaaagggtttgaagaagggtactat |
17700948 |
T |
|
| Q |
201 |
tattcactcaccgactgcccaatct |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
17700947 |
tattcactcaccgactgcccaatct |
17700923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 17662935 - 17663156
Alignment:
| Q |
1 |
gtgaataatggcggcaccttgaagaagactacaaaaattagttgtgttttttcttcttctcttcacaaccatgatcatgatgatgatgggaaaccgaaga |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17662935 |
gtgaataacggcggcaccttgaagaagactacaaaaattacttgtgttttttcttcttctcttcacaaccatgatcatgatgatt---ggaaaccgaaga |
17663031 |
T |
|
| Q |
101 |
accatacatgtgatgtttgtaacaaggtattttcatccaacaatgctttgaagggacatatgagatggcatactccaaagggtttgaagaagggtactat |
200 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17663032 |
accatacaagtgatgtttgtcacaaggtattttcatccaacactgctttgaagggacatatgagatggcatactccaaagggtttgaagaaggatactat |
17663131 |
T |
|
| Q |
201 |
tattcactcaccgactgcccaatct |
225 |
Q |
| |
|
||||| ||||| |||||||| |||| |
|
|
| T |
17663132 |
tattccctcactgactgccccatct |
17663156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 46 - 225
Target Start/End: Complemental strand, 21900125 - 21899949
Alignment:
| Q |
46 |
gttttttcttcttctcttcacaaccatgatcatgatgatgatgggaaaccgaagaaccatacatgtgatgtttgtaacaaggtattttcatccaacaatg |
145 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
21900125 |
gttttttcttcttctcttcacaatcataatcatgatgatt---ggaaactgaagaaccatacatgtgatgtttgtaacaaggttttttcgtccaacaatg |
21900029 |
T |
|
| Q |
146 |
ctttgaagggacatatgagatggcatactccaaagggtttgaagaagggtactattattcactcaccgactgcccaatct |
225 |
Q |
| |
|
||||||| || ||||||||||||||||||| |||||||| |||||| ||| ||||| ||| |||||||||||| |||| |
|
|
| T |
21900028 |
ctttgaacgggcatatgagatggcatactcaaaagggttcgaagaatggtgttattaaccacccaccgactgccccatct |
21899949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 38227637 - 38227577
Alignment:
| Q |
107 |
catgtgatgtttgtaacaaggtattttcatccaacaatgctttgaagggacatatgagatg |
167 |
Q |
| |
|
||||||||||||| |||||||| ||| | || ||||| || ||||| |||||||||||||| |
|
|
| T |
38227637 |
catgtgatgtttgcaacaaggtttttacttctaacaaagcattgaatggacatatgagatg |
38227577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University