View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_450 (Length: 243)
Name: NF11453A_low_450
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_450 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 52391194 - 52390964
Alignment:
| Q |
1 |
ttctgtcaacaattatatttattctcctcccttgttttcattcctaatgaccaacaa--tatattcaatagcatacctccttcnnnnnnnaaggcattat |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||| |||| |||||||||| |
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| T |
52391194 |
ttctgtcaacaattatatttattctcctcccttgttttcattcctaatgaccaatatattctattcaatagcataccacctt-tttttttaaggcattat |
52391096 |
T |
|
| Q |
99 |
accatctatcatgtcnnnnnnntaaatttggtagtgtgtctatcatgtcaattatcagcaagctacaacattcttttctatataatacacgcctttctta |
198 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52391095 |
accatctatcatgtcaaattttttt-tttggtagtgtgtctatcatgtcaattatcagcaagctacaacattcttttctatataatacacgcctttctta |
52390997 |
T |
|
| Q |
199 |
catttaatagtgggtatgccagccgttaatatt |
231 |
Q |
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||||||||||||| ||||||||||||||||||| |
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| T |
52390996 |
catttaatagtggatatgccagccgttaatatt |
52390964 |
T |
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