View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_451 (Length: 243)
Name: NF11453A_low_451
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_451 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 17701164 - 17701395
Alignment:
| Q |
1 |
ttgtttgtttcaggttgaacaaggatcttagagaagcggtgaatggttttgtggccaccaagtgatttactagaggtgaatgttttgtgacagaactcac |
100 |
Q |
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| T |
17701164 |
ttgtttgtttcaggttgaacaagaatcttcgaggagcggtgaatggttttgtggccaccaagtgatttactagaggtgaatgttttgtgacaaaactcac |
17701263 |
T |
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| Q |
101 |
aactgtagattcttgaacctgggtttttcttatcattttcaagagattgttggtgatcataatcatggctgtttttgggtttatcaaaggaatggtgaga |
200 |
Q |
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| T |
17701264 |
aactgtagattcttgaacctgggtttttcttatcattttcaagagattgttggtgatcatgatcatggctgtttttgggtttatcaaacgaatggtgaga |
17701363 |
T |
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| Q |
201 |
agaaggtgaagaatagtgtttgttcatgatgt |
232 |
Q |
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| T |
17701364 |
agaaggtgaagaatagtgtttgttcatgatgt |
17701395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 17662915 - 17662684
Alignment:
| Q |
1 |
ttgtttgtttcaggttgaacaaggatcttagagaagcggtgaatggttttgtggccaccaagtgatttactagaggtgaatgttttgtgacagaactcac |
100 |
Q |
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| T |
17662915 |
ttgtttgtttcaggttgaacaagaatcttagaggagcggtgaatggttttgtggccaccaagtgatttactagaggtgaatgttttgtgacaaaactcac |
17662816 |
T |
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| Q |
101 |
aactgtagattcttgaacctgggtttttcttatcattttcaagagattgttggtgatcataatcatggctgtttttgggtttatcaaaggaatggtgaga |
200 |
Q |
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| T |
17662815 |
aattgtagattcttgaacctgggtttttcttatcattttcaagagattgttggtgatcatgatcatggctgtttttgggtttatgaaacgaatggtgaga |
17662716 |
T |
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| Q |
201 |
agaaggtgaagaatagtgtttgttcatgatgt |
232 |
Q |
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| T |
17662715 |
agaaggtgaagaatagggtttgttcatgatgt |
17662684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 22667771 - 22667820
Alignment:
| Q |
176 |
tgggtttatcaaaggaatggtgagaagaaggtgaagaatagtgtttgttc |
225 |
Q |
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| T |
22667771 |
tgggtttatcaaacgaataatgagaagaaggtgaagaatagtgtttgttc |
22667820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 22667050 - 22667110
Alignment:
| Q |
124 |
tttttcttatcattttcaagagattgttggtgatcataatcatggctgtttttgggtttat |
184 |
Q |
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| T |
22667050 |
tttttcatatcagtttcaagagtctcttggtgatcttgatcatggctgttgttgggtttat |
22667110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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