View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_452 (Length: 243)
Name: NF11453A_low_452
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_452 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 6958302 - 6958528
Alignment:
| Q |
17 |
acatcatattgtaatatttgattaacacctttagctctctttcaagcaggtttggtttgtggtttctagattacatcaatataagtgttattgtgatttt |
116 |
Q |
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| T |
6958302 |
acattatattgcaatatttgattaacacctttagctctctttcaagcaggtttggtttgtggtttctagattacatcagtataagtgttattgtgatttt |
6958401 |
T |
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| Q |
117 |
tggcttatgttttataaggatggtaatatggtaggaatagttgtaggtttttagtgtcatttgaagtttgacttctgcttgaaaattgtcggtcgtactc |
216 |
Q |
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| T |
6958402 |
tggcttatgttttataaggatggtactttggtaggaatagttataggtttttagtgtcatttgaagtttgaattctgcttgaaaattgtcggtcttactc |
6958501 |
T |
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| Q |
217 |
ctgtaaaataggcacaggtgtactgtg |
243 |
Q |
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| T |
6958502 |
ttgaaaaataggcataggtgtaatgtg |
6958528 |
T |
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