View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_47 (Length: 434)
Name: NF11453A_low_47
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 13 - 428
Target Start/End: Original strand, 40000707 - 40001122
Alignment:
| Q |
13 |
agacggatttacaaagctatcaaatgagtgaccgaagaaagaaaataatttttaaacaccgacgatgtaaaacttttgtgcataatatataaatctaatt |
112 |
Q |
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| T |
40000707 |
agacggatctacaaagctatcaaatgagtgatcgaagaaagaaaataatttttaaacaccgacgatgtaaaacttttgtgcataatatataaatctaatt |
40000806 |
T |
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| Q |
113 |
aaattacactataagaccactttttattatgctataaatggatacaaattaaatcattattaaaacatacatatagattgcatatgaatttagagaaaat |
212 |
Q |
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| T |
40000807 |
aaattacactataagaccactttttattatgctataaatggatacaaattaaatcattattaaaacatacatatagattgcatatgagtttagagaaaat |
40000906 |
T |
|
| Q |
213 |
gataaaattatttata-tgatcatatatgnnnnnnngcctattcatatttctgggaatcaaattggagattcggagtagtttgtgaatcaaacataacaa |
311 |
Q |
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| T |
40000907 |
gataaaattatttatattgatcatatatg-tcttttgcctattcatatttctgggaatcaaattggagattcggagtagtttgtgaatcaaacataacaa |
40001005 |
T |
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| Q |
312 |
attaatttcccatcagagatacatattcaaatcaacatattctcttgtaatatctgagttaaaagagaaaatggaaaattatggccaatttagtttgcac |
411 |
Q |
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| T |
40001006 |
attaatttcccatcagagatacatattcaaatcaacatattcttttgtaatatatgagttaaaagagaaaatggaaaattatggctaatttagtttgcac |
40001105 |
T |
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| Q |
412 |
acagtacggtctattcc |
428 |
Q |
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| T |
40001106 |
acaatacggtctattcc |
40001122 |
T |
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