View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_474 (Length: 241)
Name: NF11453A_low_474
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_474 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 38884110 - 38883894
Alignment:
| Q |
12 |
catcatcatgagggtcataccatagacttttttcctgcccatcttatcaccaagccagccaaagaaaagttgccctgaaagtgttccacagaaagctaca |
111 |
Q |
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| T |
38884110 |
catcatcatgagggtcataccatagacttttttcctgcccatcttatcaccaagccagccaaagaaaagttgccctgaaagtgttccacagaaagctaca |
38884011 |
T |
|
| Q |
112 |
ccattcacagcagctgatacattgggaggcaatgtaccgggcttcgcagcaccatcaacgtggtagtatatgcgaccgagcaactttgtaacaagggata |
211 |
Q |
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| T |
38884010 |
ccattcacagcagctgatacattgggaggcaatgtaccgggcttcgcagcaccatcaacgtggtagtatatgcgaccgagcaactttgtaacaagggata |
38883911 |
T |
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| Q |
212 |
cacagaacagatcatag |
228 |
Q |
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||||||||||||||||| |
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| T |
38883910 |
cacagaacagatcatag |
38883894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 38893298 - 38893086
Alignment:
| Q |
16 |
atcatgagggtcataccatagacttttttcctgcccatcttatcaccaagccagccaaagaaaagttgccctgaaagtgttccacagaaagctacaccat |
115 |
Q |
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| T |
38893298 |
atcatcagtgtcataccatacactttcttcctacccaacttatcaccaagccagccaaagaaaagctgccctgtaagtgtaccacagaaagcaaccccat |
38893199 |
T |
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| Q |
116 |
tcacagcagctgatacattgggaggcaatgtaccgggcttcgcagcaccatcaacgtggtagtatatgcgaccgagcaactttgtaacaagggatacaca |
215 |
Q |
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| T |
38893198 |
taaccgcagctgatacattgggtggcaatgtaccgggcttcccggcaccatcaacatggtaatatatgcgtcccagcaacttggtaacaagggatatgca |
38893099 |
T |
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| Q |
216 |
gaacagatcatag |
228 |
Q |
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| T |
38893098 |
gaacagatcatag |
38893086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 37315993 - 37316106
Alignment:
| Q |
30 |
accatagacttttttcctgcccatcttatcaccaagccagccaaagaaaagttgccctgaaagtgttccacagaaagctacaccattcacagcagctgat |
129 |
Q |
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|||||| |||||||| || ||||| || || |||||||| |||||||||||||| |||| || || ||||||| ||| |||||||| || || |||||| |
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| T |
37315993 |
accataaactttttttcttcccattttgtccccaagccaaccaaagaaaagttggcctgctagagtgccacagagagcaacaccatttactgctgctgat |
37316092 |
T |
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| Q |
130 |
acattgggaggcaa |
143 |
Q |
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||||| |||||||| |
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| T |
37316093 |
acatttggaggcaa |
37316106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 33115227 - 33115133
Alignment:
| Q |
22 |
agggtcataccatagacttttttcctgcccatcttatcaccaagccagccaaagaaaagttgccctgaaagtgttccacagaaagctacaccatt |
116 |
Q |
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|||||||| ||||| ||| ||| || ||||| || ||||||||||| |||||||||||||| |||| |||| ||||| |||||| |||||||| |
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| T |
33115227 |
agggtcattccataaactcgttttcttcccattttgtcaccaagccaaccaaagaaaagttgtcctgccagtgctccactgaaagcaacaccatt |
33115133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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