View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_485 (Length: 239)
Name: NF11453A_low_485
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_485 |
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Alignment Details
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 15760866 - 15760816
Alignment:
| Q |
175 |
ggtgagacctaaagacgaggaaccgttgaaagaataatgatatgttgatgg |
225 |
Q |
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| T |
15760866 |
ggtgagacctaaagacgaggaaccgttgaaagaatgatgatatgttgatgg |
15760816 |
T |
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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 15761018 - 15760969
Alignment:
| Q |
25 |
gacacatcgacatcgctaacttaaaaaacattagacactgacacctataca |
75 |
Q |
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| T |
15761018 |
gacacatcgacatcgctaac-taaaaaacattggacactgacacctctaca |
15760969 |
T |
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