View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_494 (Length: 237)
Name: NF11453A_low_494
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_494 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 49165608 - 49165389
Alignment:
| Q |
1 |
gcagtgattttcttttagttgccttcgttcctgaggtttgccaacaaaagtatataatcaatttacaaataagctatgtctatttgtaaaactacaatag |
100 |
Q |
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| T |
49165608 |
gcagtgagtttctttgagtttccttcgttcctgaggtatgccaacaaaagtatataatcaatttacaaataagctatgtctatttgtaaaactacaatag |
49165509 |
T |
|
| Q |
101 |
ttgcannnnnnnnncttgattctagtgttgtcaatcgtgagtcatnnnnnnntagaggattattcaagctgcattgtagtgccactaaacaacattttgt |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49165508 |
ttgca--tttttttcttgattctagtgttgtcaatcgtgagtcataaaaaaatagaggattattcaagctgcattgtagtgccactaaacaacattttgt |
49165411 |
T |
|
| Q |
201 |
attaaatagtgtatggtagaac |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
49165410 |
attaaatagtgtatggtagaac |
49165389 |
T |
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