View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_499 (Length: 236)

Name: NF11453A_low_499
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_499
NF11453A_low_499
[»] chr3 (3 HSPs)
chr3 (20-236)||(1425843-1426059)
chr3 (20-223)||(1447933-1448137)
chr3 (75-148)||(1470464-1470537)
[»] chr1 (1 HSPs)
chr1 (37-121)||(52442825-52442909)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 1425843 - 1426059
Alignment:
Q  20 agctctaattctatcccgtctaatcttactataaatcgaacacaacttcctcatatctactatgcttaatttatgtttgtgctgattgtttaccaccaaa 119  Q
    |||||||||||||| |||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  1425843 agctctaattctattccgtctaatcttactatacatccaacacaacgtcctcatatctactatgcttaatttatgtttttgctggttgtttaccaccaaa 1425942  T
Q  120 catcatcagctttattgatgttcgataaacaaattctttcaacatgaacggtactttcgaatcacacaaaacacacgaggcattcgtctagttcaaccac 219  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1425943 catcatcagctttattgatgttcgataaaaaaattctttcaacgtgaacggtactttcgaatcacacaaaacacacgaggcattcgtctagttcaaccac 1426042  T
Q  220 ccatccatgggtttgat 236  Q
    |||||||||||||||||    
T  1426043 ccatccatgggtttgat 1426059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 1447933 - 1448137
Alignment:
Q  20 agctctaattctatcccgtctaatcttactataaatcgaacacaacttcctcatatctactatgcttaatttatgtttgtgctgattgtttaccaccaaa 119  Q
    |||||||||| |||||| |||| |||||||| | ||| ||||||||||| ||||||||| ||||||||||||||||||||| || |||||||||||||||    
T  1447933 agctctaattttatcccctctagtcttactacacatccaacacaacttcttcatatctattatgcttaatttatgtttgtgttggttgtttaccaccaaa 1448032  T
Q  120 catcatcagctttattgatgttcgataaacaaattctttcaaca--tgaacggtactttcgaatcacacaaaacacacgaggcattcgtctagttcaacc 217  Q
    ||||||||| ||||||||||||||||||| || || ||||||||  |||   ||||||||| |||||| |||||||||||||||||| || | |||||||    
T  1448033 catcatcagttttattgatgttcgataaa-aatttatttcaacacgtgagtagtactttcgcatcacataaaacacacgaggcattcctccatttcaacc 1448131  T
Q  218 acccat 223  Q
    ||||||    
T  1448132 acccat 1448137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 1470464 - 1470537
Alignment:
Q  75 tctactatgcttaatttatgtttgtgctgattgtttaccaccaaacatcatcagctttattgatgttcgataaa 148  Q
    |||||||||||||||||||||||||| || ||| ||||||||||||||| |  | |||| | ||||||||||||    
T  1470464 tctactatgcttaatttatgtttgtgttggttgcttaccaccaaacatcgttggttttactaatgttcgataaa 1470537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 52442825 - 52442909
Alignment:
Q  37 gtctaatcttactataaatcgaacacaacttcctcatatctactatgcttaatttatgtttgtgctgattgtttaccaccaaaca 121  Q
    ||||| |||||| | | ||| |||||||| ||||||| ||| ||| ||||||||||| |||||| || ||  |||||||||||||    
T  52442825 gtctagtcttaccacacatccaacacaacatcctcatgtctgctacgcttaatttatttttgtgttgtttcattaccaccaaaca 52442909  T

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