View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_5 (Length: 579)
Name: NF11453A_low_5
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 570
Target Start/End: Complemental strand, 30841800 - 30841247
Alignment:
| Q |
18 |
aataacccctagtacgaggaaataaagaaatggaccaaccacannnnnnnataattaatgttgtttagcaaatatgaggtagaagttttacattgtttta |
117 |
Q |
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| T |
30841800 |
aataaccgctagtacgaggaaataaagaaatggaccaaccacatttttttataattaatgttgtttagcaaatatgaggtagaagttttacattgtttaa |
30841701 |
T |
|
| Q |
118 |
aaagtgaaggttacgattttgagtaaagatggggtgtacaattcacttgtatgatcgctcttagtctaatgaggatgatccatcgggctcctctcgtaac |
217 |
Q |
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| T |
30841700 |
aaagtggaggttacgattttgagtaaagatggggtgtacaattcacttgtatgatcgctctgagtccaatgtggatgatccatcgggctcctctcgtaac |
30841601 |
T |
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| Q |
218 |
ccaacaatggtctctgtgacgtggttcaatggagagttcggccaactctttgtattgaaattcttttgaaccaagggagttcaggcaggttgtcacgttg |
317 |
Q |
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| T |
30841600 |
gcaacagtggtctctgtgacgtggtttaatgaagagttcgaccaactctttgtattgaaattcttttgaaccaagggtgttcaggcgggatgtcacgtta |
30841501 |
T |
|
| Q |
318 |
agtgtcatcaactgcagtgcaagtaagtgcaagtggatgaaaaagtttatgtttgacggggggtatgatgaattgatgagctcacacctggagagaagat |
417 |
Q |
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||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30841500 |
agtgtcatcaactgcggtgcaagtaagtgtaagtggatgaaaaagtttatgtttgacggggggtatgatgaattgatgagcttacacctggagagaagat |
30841401 |
T |
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| Q |
418 |
tgttgtgtaacaagcgtgagttggaagttgcaagtatgagttagacttagaagtat-acattacttagaaaagtgaaggtagagcacttataaataagat |
516 |
Q |
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||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||| |
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| T |
30841400 |
tgtagtgtaacaaccgtgagttggaagttgcaagtatgagttagacttagaagtataacattacttagaaaagtgaaggttgaacacttataaataagat |
30841301 |
T |
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| Q |
517 |
tactcataaacctannnnnnnaaggttttgggtaaagatgtgatgtccatctca |
570 |
Q |
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| T |
30841300 |
gactcataaacctatttttttaaggttttgggtaaagatgcggtgtccaactca |
30841247 |
T |
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