View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_502 (Length: 235)
Name: NF11453A_low_502
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_502 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 42551065 - 42550848
Alignment:
| Q |
1 |
agaatgagcatccaaacctcctgagcaaaaccattcaaggcagcaccagcaagaaagagcacccctccagaaatcatggtgagacgccttccaaacgatc |
100 |
Q |
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| T |
42551065 |
agaatgagcatccaaacctcttgagcaaaaccattcaaggcagcaccagcaagaaaaagcacacctccagaaatcatggtgagacgccttccaaacgatc |
42550966 |
T |
|
| Q |
101 |
gagttactgtggatgccccaagtgatgctacaagagcagccaaatacaaagaggaggtaaacaatgttaacgtttggctatcgaatctgcagtactggtt |
200 |
Q |
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| T |
42550965 |
gagttactgtggatgccccaagtgatgctacaagagcagccaaatacaaagaggaggtaaacaatgttaacgtttggctatcgaatctgcagtactggtt |
42550866 |
T |
|
| Q |
201 |
ggtagaaggttttatagt |
218 |
Q |
| |
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|||||||||||||||||| |
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| T |
42550865 |
ggtagaaggttttatagt |
42550848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 163
Target Start/End: Original strand, 42519050 - 42519182
Alignment:
| Q |
31 |
ccattcaaggcagcaccagcaagaaagagcacccctccagaaatcatggtgagacgccttccaaacgatcgagttactgtggatgccccaagtgatgcta |
130 |
Q |
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| T |
42519050 |
ccattcatggcagctccggcgagaaaaagaacaccaccagagagcatggtaagacgtcttccaaagattctagttacagtggatgctccaagagaagcca |
42519149 |
T |
|
| Q |
131 |
caagagcagccaaatacaaagaggaggtaaaca |
163 |
Q |
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| T |
42519150 |
caagagcggccaaatacaaagaggatgtaaaca |
42519182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 194
Target Start/End: Original strand, 1240829 - 1240992
Alignment:
| Q |
31 |
ccattcaaggcagcaccagcaagaaagagcacccctccagaaatcatggtgagacgccttccaaacgatcgagttactgtggatgccccaagtgatgcta |
130 |
Q |
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| T |
1240829 |
ccattcatagcagctccagcgagaaaaagaacaccaccagagagcatggtaagatgtcttccaaagattctagttgcggtggatgctccaagagaagcca |
1240928 |
T |
|
| Q |
131 |
caagagcagccaaatacaaagaggaggtaaacaatgttaacgtttggctatcgaatctgcagta |
194 |
Q |
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||||||| ||||||||||||||||| |||||||| |||| || || || |||||| ||||||| |
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| T |
1240929 |
caagagcggccaaatacaaagaggatgtaaacaacgttagtgtctgactgtcgaatttgcagta |
1240992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 201
Target Start/End: Original strand, 18235234 - 18235432
Alignment:
| Q |
3 |
aatgagcatccaaacctcctgagcaaaaccattcaaggcagcaccagcaagaaagagcacccctccagaaatcatggtgagacgccttccaaacgatcga |
102 |
Q |
| |
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|||||||||||||||||| |||||||| ||||||| |||||||||||||||||| || || || ||||||| |||||||| ||| ||||||| | |||| |
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| T |
18235234 |
aatgagcatccaaacctcttgagcaaagccattcatggcagcaccagcaagaaaaagaacaccaccagaaagcatggtgatacgtcttccaagcactcga |
18235333 |
T |
|
| Q |
103 |
gttactgtggatgccccaagtgatgctacaagagcagccaaatacaaagaggaggtaaacaatgttaacgtttggctatcgaatctgcagtactggttg |
201 |
Q |
| |
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|||| || |||||||| ||||| | ||||||||||| ||||||||||| || || ||||||||||||||||| |||||| |||||||||||||| |
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| T |
18235334 |
gttagccacgacgccccaagagatgcgataagagcagccacgtacaaagaggatgtgaataatgttaacgtttggctgtcgaatttgcagtactggttg |
18235432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 164
Target Start/End: Original strand, 41972462 - 41972595
Alignment:
| Q |
31 |
ccattcaaggcagcaccagcaagaaagagcacccctccagaaatcatggtgagacgccttccaaacgatcgagttactgtggatgccccaagtgatgcta |
130 |
Q |
| |
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||||||| ||||| ||||| ||||| || || || ||||| | |||||| ||||| |||||||| || |||||| |||||||| ||||| || | | |
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| T |
41972462 |
ccattcatagcagctccagcgagaaaaagaacaccaccagagagcatggtaagacgtcttccaaagattctagttacggtggatgctccaagagaatcca |
41972561 |
T |
|
| Q |
131 |
caagagcagccaaatacaaagaggaggtaaacaa |
164 |
Q |
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||||||| ||||||||||||||||| |||||||| |
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| T |
41972562 |
caagagcggccaaatacaaagaggatgtaaacaa |
41972595 |
T |
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