View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_508 (Length: 235)
Name: NF11453A_low_508
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_508 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 28330225 - 28330018
Alignment:
| Q |
16 |
gcaatgagtagaatattcttttagccttttgcatttgatgaagtgagcaatgcccttccattagcgtgttaaaaatagcaagatcaggctcaagtccatc |
115 |
Q |
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| T |
28330225 |
gcaatgagtagaatattcttttagccttttgcatttgatgaagtgagcaatgcccttccattagcgtgttaaaaatagcaagatcaggctcaagtccatc |
28330126 |
T |
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| Q |
116 |
tttgatcattgtgttaagcaatgctttagattctcttaccctcttccttttgcatagataagccattagtgcactataagtataaacagtggggttgata |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28330125 |
tttgatcattgtgttaagcaatgctttagattctcttaccctcttccttttgcatagataagccattagtgcactataagtataaacagtggggttgatt |
28330026 |
T |
|
| Q |
216 |
ttgttcga |
223 |
Q |
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| |||||| |
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| T |
28330025 |
tcgttcga |
28330018 |
T |
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