View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_511 (Length: 233)
Name: NF11453A_low_511
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_511 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 55341744 - 55341954
Alignment:
| Q |
20 |
catcttcgatgagatgagaaaagcacctgagatggatttccaagcaagacttgccatgcttggcgcagcnnnnnnnnnnnnntaagctggccttagcact |
119 |
Q |
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| T |
55341744 |
catcttcgatgagatgagaaaagcacctgagatggatttccaagcaagacttgccatgcttggtgcagcaaaaaacaaaaaataagctggccttagcact |
55341843 |
T |
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| Q |
120 |
acaggaaactgattactacttgttagacgctgatacagcgtcacaaatagaatcaaataatgtaccattcctaatgaatacattgaaattgcaatctcgt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55341844 |
acaggaaactgattactacttgttagacgctgatacagcgtcacaaatagaatcaaataatgtaccattcctaatgaatacattgaaattgcaatctcgt |
55341943 |
T |
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| Q |
220 |
tccaaccaatt |
230 |
Q |
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||||||||||| |
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| T |
55341944 |
tccaaccaatt |
55341954 |
T |
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