View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453A_low_512 (Length: 233)
Name: NF11453A_low_512
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_512 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 36 - 215
Target Start/End: Complemental strand, 25382281 - 25382097
Alignment:
| Q |
36 |
cagtcaccaaaacaagtaaaattaaaacaagtactctaaataccaactcatatacctgtgaacttttttct------ggagcgcggctagatgtagcgcg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25382281 |
cagtcaccaaaacaagtaaaattaaaacaagtactttaaataccaactcatatacctgtgaacttttttctttaggtggagcgcggctagatgtagcgcg |
25382182 |
T |
|
| Q |
130 |
actttgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgtacccctaaacccctttgcttgcataaca |
215 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||| |
|
|
| T |
25382181 |
actatgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgta-ccttgaacccctttgcttgcataaca |
25382097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 36 - 213
Target Start/End: Complemental strand, 11474168 - 11473986
Alignment:
| Q |
36 |
cagtcaccaaaacaagtaaaattaaaacaagtactctaaataccaactcatatacctgtgaacttttttct------ggagcgcggctagatgtagcgcg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
11474168 |
cagtcaccaaaacaagtaaaattaaaacaagtactttaaataacaactcatatacctgtgaacttttttctttaggtggagcgcgcctagatgtagcgcg |
11474069 |
T |
|
| Q |
130 |
actttgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgtacccctaaacccctttgcttgcataa |
213 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
11474068 |
actatgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgta-ccctgaacccctttgcttgcataa |
11473986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 39 - 215
Target Start/End: Original strand, 50019454 - 50019635
Alignment:
| Q |
39 |
tcaccaaaacaagtaaaattaaaacaagtactctaaataccaactcatatacctgtgaacttttttct------ggagcgcggctagatgtagcgcgact |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
50019454 |
tcaccaaaacaagtaaaattaaaacaagtactctaaataccaactcatatacctgtgaacttttttctttacgtggagcgcaactagatgtagcgcgact |
50019553 |
T |
|
| Q |
133 |
ttgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgtacccctaaacccctttgcttgcataaca |
215 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||| |
|
|
| T |
50019554 |
ttgctggttttccagaaaacttttgtgtcgcttaattcgctttgaaccgggtcgta-ccctgaacccctttgcttgcagaaca |
50019635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 36 - 213
Target Start/End: Original strand, 28245883 - 28246050
Alignment:
| Q |
36 |
cagtcaccaaaacaagtaaaattaaaacaagtactctaaataccaactcatatacctgtgaacttttttctggagcgcggctagatgtagcgcgactttg |
135 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| ||| || ||||||||| || |
|
|
| T |
28245883 |
cagtcaccaaaacaagtaaaactaaaacaagtactttaaataacaactcatatacctgtgaacttttttctt---------taggtggagcgcgactatg |
28245973 |
T |
|
| Q |
136 |
ctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgtacccctaaacccctttgcttgcataa |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| |
|
|
| T |
28245974 |
ctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggttgta-ccctgaacccctttgcttgcataa |
28246050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 36 - 213
Target Start/End: Original strand, 38252698 - 38252880
Alignment:
| Q |
36 |
cagtcaccaaaacaagtaaaattaaaacaagtactctaaataccaactcatatacctgtgaacttttttct------ggagcgcggctagatgtagcgcg |
129 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
38252698 |
cagtcaccaaaacaagtaaaactaaaacaagtactttaaataacaactcatatacctgtgaacttttttctttaggtggagcgcgcctagatgtagcgcg |
38252797 |
T |
|
| Q |
130 |
actttgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgtacccctaaacccctttgcttgcataa |
213 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
38252798 |
actatgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgta-ccctgaacccctttgcttgcataa |
38252880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 36 - 213
Target Start/End: Complemental strand, 43156844 - 43156662
Alignment:
| Q |
36 |
cagtcaccaaaacaagtaaaattaaaacaagtactctaaataccaactcatatacctgtgaacttttttct------ggagcgcggctagatgtagcgcg |
129 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
43156844 |
cagtcaccaaaacaagtaaaactaaaacaagtactttaaataacaactcatatacctgtgaacttttttctttaggtggagcgcgcctagatgtagcgcg |
43156745 |
T |
|
| Q |
130 |
actttgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgtacccctaaacccctttgcttgcataa |
213 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
43156744 |
actatgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgta-ccctgaacccctttgcttgcataa |
43156662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 36 - 213
Target Start/End: Original strand, 19307560 - 19307742
Alignment:
| Q |
36 |
cagtcaccaaaacaagtaaaattaaaacaagtactctaaataccaactcatatacctgtgaacttttttct------ggagcgcggctagatgtagcgcg |
129 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
19307560 |
cagtcaccaaaacaagtaaaaataaaacaagtactttaaataacaactcatatacctgtgaacttttttctttaggtggagcgcgcctagatgtagcgcg |
19307659 |
T |
|
| Q |
130 |
actttgctgtttttccagacaacttttgtgtcgcttaattcgctttgaaccgggtcgtacccctaaacccctttgcttgcataa |
213 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
19307660 |
actatgctgtttttccaaacaacttttgtgtcgcttaattcgctttgaaccgggtcgta-ccctgaacccctttgcttgcataa |
19307742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University