View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453A_low_519 (Length: 231)
Name: NF11453A_low_519
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_519 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 37 - 226
Target Start/End: Original strand, 50637317 - 50637503
Alignment:
| Q |
37 |
gggtgagggagccaagtgaggaaggatataataatttactccaaatgtgagatttattatatttctatgtaatttaatttaatttagtgggaggactact |
136 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
50637317 |
gggtgggggagccaagtgaggaaggatatagtaatttactccaaatgtgagatgtat---atttctatgtaatttaatttaatttagtggggggactact |
50637413 |
T |
|
| Q |
137 |
cccatgggctccttaaagagttccgtcgctggtaatagaaatgtgttcatcataatggcgggtgtttctcttattaacatcgcactaaat |
226 |
Q |
| |
|
|| ||||||||||||||||||| | | || |||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
50637414 |
cctatgggctccttaaagagttttgccactagtaatagaaacatgttcatcataatggtgggtgtttctcttattaacattgcactaaat |
50637503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 50636669 - 50636701
Alignment:
| Q |
1 |
ttgcaattttacctaatgattgggtttgggagg |
33 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
50636669 |
ttgcaattttacctaatgattgggtttgggagg |
50636701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 226
Target Start/End: Original strand, 50637580 - 50637670
Alignment:
| Q |
135 |
ctcccatgggctccttaaagagttccgtcgctggt-aatagaaatgtgttcatcataatggcgggtgtttctcttattaacatcgcactaaat |
226 |
Q |
| |
|
|||||||||||||||||||||||| | | || || |||||| || ||||||||||||||| | ||| | ||||||||||||| |||||||| |
|
|
| T |
50637580 |
ctcccatgggctccttaaagagttttgccactagtaaatagatatttgttcatcataatggtgagtggt--tcttattaacatcacactaaat |
50637670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University