View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_53 (Length: 429)
Name: NF11453A_low_53
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 17 - 410
Target Start/End: Original strand, 46263427 - 46263823
Alignment:
| Q |
17 |
gacatcatatcagacg---gtacaaatttgtaaccattaccactctcaagtgtcattatacaaatcagaaaagctacagttttaacaatcattatttcaa |
113 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46263427 |
gacatcatatcagacgacggtacaaatttgtaaccattaccactctcaagtgtcattatacaaatcagaaaagctacagttttaacaatcattatttcaa |
46263526 |
T |
|
| Q |
114 |
aagttatttacgttctgacatttaagttgttacgagaaacattgtaaatcgaccatgaacaacatttatagtgtatgcacgactatgtccaaactgtgag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46263527 |
aagttatttacgttctgacatttaagttgttacgagaaacattgtaaatcgaccatgaacaacatttatagtgtatgcacgactatgtccaaactgtgag |
46263626 |
T |
|
| Q |
214 |
gtaaagtgacatgtgtaaaacacaattataacaagagcatacactggtccaaagaaatatccaatgaatcaggttgatcgtttcttaagataccattttg |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||| || |||||||||||||| |
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| T |
46263627 |
gtaaagtgacatgtgtaaaacacaattataacaagagcatacactggtccaaagaaatatcaattgaatcagtttgatcgttcctaaagataccattttg |
46263726 |
T |
|
| Q |
314 |
ctccgtcccgttggcagcacttggtgctttttccaaagctttctccagtgcaatcttccactcgtataagtcctctgtagtttcagcctacaacatc |
410 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46263727 |
ctccatcccgttggcagcacttggtgctttttccaaagctttctccagtgcaatcttccactcgtataagtcctctgtagtttcagcctacaacatc |
46263823 |
T |
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