View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_530 (Length: 230)
Name: NF11453A_low_530
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_530 |
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Alignment Details
Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 67 - 225
Target Start/End: Complemental strand, 2820872 - 2820714
Alignment:
| Q |
67 |
atcagatgaggtaacagtgaggacctcatcatcattgaattttggggcactcgtgtgatgaaaggatacaagaggaacatgcttgataatccagtggtct |
166 |
Q |
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| T |
2820872 |
atcagatgaagtaatagtgcagatctcatcatcattgaattttgggtcactcgtgtgatgaaaggatacaagaggagcatgcttgatactccaatagtca |
2820773 |
T |
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| Q |
167 |
tttcctttgtctgtttcaatactctcaacaagttcatacgacatttcattgaagttaat |
225 |
Q |
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| T |
2820772 |
tttccattgttttgatcaatactctcaaagaattcatctgccatttcactgaagttaat |
2820714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 2820964 - 2820903
Alignment:
| Q |
1 |
ttataagagaagcattgcatgatcagaggaaaggtaccttcatattttgaagtttgcaagac |
62 |
Q |
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| T |
2820964 |
ttataagagaagcattgcatgatcagaggaaaggtaccttcatattttgaagcttgcaagac |
2820903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 103 - 225
Target Start/End: Complemental strand, 2809543 - 2809421
Alignment:
| Q |
103 |
gaattttggggcactcgtgtgatgaaaggatacaagaggaacatgcttgataatccagtggtcttttcctttgtctgtttcaatactctcaacaagttca |
202 |
Q |
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| T |
2809543 |
gaattttgggccactcgagtgatgaatggatacaagaggaacatgcttgattatccggtagtcttttcctttgtctggatcaacgctttcaacaaattca |
2809444 |
T |
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| Q |
203 |
tacgacatttcattgaagttaat |
225 |
Q |
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| T |
2809443 |
gctggcatttcagtgaagttaat |
2809421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 225
Target Start/End: Complemental strand, 2761477 - 2761368
Alignment:
| Q |
116 |
ctcgtgtgatgaaaggatacaagaggaacatgcttgataatccagtggtcttttcctttgtctgtttcaatactctcaacaagttcatacgacatttcat |
215 |
Q |
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| T |
2761477 |
ctcgagtgatgaatggatacaagagggacatgcttgataatcatgtagtcttttcctttgtctggatcaatactttcaacaaattcagatggcatttcag |
2761378 |
T |
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| Q |
216 |
tgaagttaat |
225 |
Q |
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| T |
2761377 |
tgaagttaat |
2761368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 2809675 - 2809624
Alignment:
| Q |
1 |
ttataagagaagcattgcatgatcagaggaaaggtaccttcatattttgaag |
52 |
Q |
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| T |
2809675 |
ttataagagaagcattgcatgatcagaggaaaggtaccttcatattttgaag |
2809624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 2799766 - 2799725
Alignment:
| Q |
3 |
ataagagaagcattgcatgatcagaggaaaggtaccttcata |
44 |
Q |
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| T |
2799766 |
ataagagaagcattgcatgatcagaggaaaggtaccttcata |
2799725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 2761614 - 2761565
Alignment:
| Q |
8 |
agaagcattgcatgatcagaggaaaggtaccttcatattttgaagtttgc |
57 |
Q |
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| T |
2761614 |
agaagcattacatgatcggatgaaaggtaccttcatattttgaagcttgc |
2761565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 2836337 - 2836396
Alignment:
| Q |
3 |
ataagagaagcattgcatgatcagaggaaaggtaccttcatattttgaagtttgcaagac |
62 |
Q |
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| T |
2836337 |
ataagagaagcattgcgcgatcagaggagaggtaccttcttgttttgaagcttgctagac |
2836396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 2771307 - 2771237
Alignment:
| Q |
132 |
atacaagaggaacatgcttgataatccagtggtcttttcctttgtctgtttcaatactctcaacaagttca |
202 |
Q |
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| T |
2771307 |
atacaagaggaacatgcttgataatcgagtagtcttgccctttatctggatcaatgctttcaacaaattca |
2771237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 2792719 - 2792671
Alignment:
| Q |
3 |
ataagagaagcattgcatgatcagaggaaaggtaccttcatattttgaa |
51 |
Q |
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| T |
2792719 |
ataagagaagtgttgaatgatcagaggaaaggcaccttcatcttttgaa |
2792671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 2853706 - 2853758
Alignment:
| Q |
134 |
acaagaggaacatgcttgataatccagtggtcttttcctttgtctgtttcaat |
186 |
Q |
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| T |
2853706 |
acaagaggaacatgcttgataatccagtagctgtgtcctttgtctggttcaat |
2853758 |
T |
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