View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453A_low_532 (Length: 230)
Name: NF11453A_low_532
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_532 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 26131615 - 26131392
Alignment:
| Q |
1 |
ttgtgtggattgctaccggcgtatagaaaaatgactcaggctgacatgttttccgctgcatgtggtgcagttgagtatcttcgagatctttgcaccaaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26131615 |
ttgtgtggattgctaccggcgtatagaaaaatgactcaggctgacatgttttccgatgcatgtggtgcagttaagtatcttcgagatctttgcaccaaag |
26131516 |
T |
|
| Q |
101 |
accctcgtatgtttgtgagacactgttttgacaatgataggagcctggagtgtttgttatggtgtgacggtgaaagtcgtatgaactatgagatatttgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26131515 |
accctcgtatgtttgtgagacactgttttgacaatgataggaggctggagtgtttgttatggtgtgacggtgaaagtcgtatgaactatgagatatttgg |
26131416 |
T |
|
| Q |
201 |
agatgttttgacctttgatgcaac |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
26131415 |
agatgttttgacctttgatgcaac |
26131392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 63 - 225
Target Start/End: Original strand, 11010016 - 11010178
Alignment:
| Q |
63 |
tggtgcagttgagtatcttcgagatctttgcaccaaagaccctcgtatgtttgtgagacactgttttgacaatgataggagcctggagtgtttgttatgg |
162 |
Q |
| |
|
||||| |||| |||||||||||||||||||||| | || |||| |||||||||| | |||| ||||| |||||||||| || ||| || |||| ||| |
|
|
| T |
11010016 |
tggtgaagttaagtatcttcgagatctttgcacagacgatcctctaatgtttgtgaaaagctgtattgacgatgataggaggcttgagcgtctgttctgg |
11010115 |
T |
|
| Q |
163 |
tgtgacggtgaaagtcgtatgaactatgagatatttggagatgttttgacctttgatgcaact |
225 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11010116 |
tgtgacggtgaaagtcgtatgaattatgagatatttggagatgttttggcctttgatgcaact |
11010178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 63 - 225
Target Start/End: Complemental strand, 35242340 - 35242178
Alignment:
| Q |
63 |
tggtgcagttgagtatcttcgagatctttgcaccaaagaccctcgtatgtttgtgagacactgttttgacaatgataggagcctggagtgtttgttatgg |
162 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| || || |||| ||||||||||| | ||| |||| ||||||||||||| ||| || |||| ||| |
|
|
| T |
35242340 |
tggtgcagttaactatcttcgagatctttgcacaaacgatcctcttatgtttgtgaaaagttgtattgatgatgataggagccttgagcgtctgttctgg |
35242241 |
T |
|
| Q |
163 |
tgtgacggtgaaagtcgtatgaactatgagatatttggagatgttttgacctttgatgcaact |
225 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
35242240 |
tgtgacggtgaaagtcgtatgaattatgagatatttggagatgttttggccttcgatgcaact |
35242178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University