View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_536 (Length: 230)
Name: NF11453A_low_536
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_536 |
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Alignment Details
Target: chr3 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 53388250 - 53388425
Alignment:
| Q |
1 |
tcagaaaaagattcatctgaaggtactggtaatggaagtcccaaggaatatttctgtatgaaggatgatgatggtggaagtgaatctcggtcgcatgttg |
100 |
Q |
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| T |
53388250 |
tcagaaaaagattcatctgaaggtattagtgagggaagtcccaaggaacaattatgtatgaaggatgatgacggtggaagtgaatctcggtcgcatgttg |
53388349 |
T |
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| Q |
101 |
attctgcatcaagtgagagagcaaagactacaatgctaccaaatggattaatcaacgaagattatagtcctgtaat |
176 |
Q |
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| T |
53388350 |
attctacgtcaagtgagagaacaaagcctacaatgctaccagatggattaatcaatgaggattgtagtcctgtaat |
53388425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 10597539 - 10597664
Alignment:
| Q |
1 |
tcagaaaaagattcatctgaaggtactggtaatggaagtcccaaggaatatttctgtatgaaggatgatgatggtggaagtgaatctcggtcgcatgttg |
100 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
10597539 |
tcagaaaaagattcatctgaaggtactagtgatggaagtcccaaggaacagttctgtatgaaggatgatgatggtagaagtgaatctcggtcgcatgttg |
10597638 |
T |
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| Q |
101 |
attctgcatcaagtgagagagcaaag |
126 |
Q |
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| T |
10597639 |
attctgcatcaagtgagagaacaaag |
10597664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 92 - 226
Target Start/End: Original strand, 10597666 - 10597800
Alignment:
| Q |
92 |
cgcatgttgattctgcatcaagtgagagagcaaagactacaatgctaccaaatggattaatcaacgaagattatagtcctgtaattgctgctgatgcatt |
191 |
Q |
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|||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||| || ||| ||||||||||| ||||||||||||| |
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| T |
10597666 |
cgcatgttgattctgcattaagtgagagaacaaagaccacaatgctaccaaatggattaatcaatgaggatagcagtcctgtaatggctgctgatgcatc |
10597765 |
T |
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| Q |
192 |
ggattccacaagtaatttttctgacaaaacggatt |
226 |
Q |
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| T |
10597766 |
ggattccacaagtgatcttgttgacaaaacggatt |
10597800 |
T |
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