View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453A_low_545 (Length: 230)
Name: NF11453A_low_545
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_545 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 26 - 224
Target Start/End: Complemental strand, 38930113 - 38929915
Alignment:
| Q |
26 |
aacatagacgtttagtgatataaatattgagagatgaaattggatgtttctgtcaaaattacttttagcatgaattttattaaactatctacaaatttat |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38930113 |
aacatagacgtttagtgatataaatattgagagatgaaattggatgtttctgtcaaaattacttttagcatgaattttattaaactatctacaaatttat |
38930014 |
T |
|
| Q |
126 |
gtaatcttttttaagggatcttaatcaacactgtataatggggggaacattattaaaataattattaccattataccttataatgaataatgtttataa |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38930013 |
gtaatcttttttaagggatcttaatcaacactgtctaatggggggaacattattaaaataattattaccattataccttataatgaataatgtttataa |
38929915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University