View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_548 (Length: 230)
Name: NF11453A_low_548
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_548 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 38622284 - 38622506
Alignment:
| Q |
1 |
ttccagaaactaaaagcttgaaaattgtacaaataattaatgaaattaattacaaaagtaggcaagtaattaattaaaacacaaatacctgtaaaggagt |
100 |
Q |
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| T |
38622284 |
ttccagaaactaaaagcttgaaaattgtacaaataat-aatgaaattaataacaaa-gtaggcaagtaattaagtaaaacacaaatacctgtaaaggagt |
38622381 |
T |
|
| Q |
101 |
caaattaatgcagattggttgacagtttcccttaggcttgaagcaaacacaagtgagtcctttaccaatccaataaggtgaaccacatgtcgcagcatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38622382 |
caaattaatgcagattggttgacagtttcccttaggcttgaagcaaacacaagtgagtcctttaccaatccaataaggtgaaccacatgttgcagcatca |
38622481 |
T |
|
| Q |
201 |
tctgcatataaccaatcagaagagt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
38622482 |
tctgcatataaccaatcagaagagt |
38622506 |
T |
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