View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_550 (Length: 230)
Name: NF11453A_low_550
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_550 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 2902149 - 2902372
Alignment:
| Q |
1 |
gaggtttgactattccacttacatctttgaggatagtcatatgtttctttttgctagtgaaaatatggagataagtcaagatactctgaaagaccaaaga |
100 |
Q |
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| T |
2902149 |
gaggtttgactattccacttacatctttgaggatagtcatatgtttctttttgctagtgaaaatatggagataagtcaagatactctgaaagaccaaaga |
2902248 |
T |
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| Q |
101 |
aagcatggttatgagactaattgcaaagtaaagaaacaacaaaagctgagaaagtagaatctggttatatttacctcgactgcattcataactgagttca |
200 |
Q |
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| T |
2902249 |
aagcatggttatgagactaattgcaaagtaaagaaacaacaaaagctgagaaagtagaatctggttatatttacctcgactgcattcataactgagttca |
2902348 |
T |
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| Q |
201 |
acaaagttggtaaagccctgcctc |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
2902349 |
acaaagttggtaaagccctgcctc |
2902372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2882861 - 2882641
Alignment:
| Q |
1 |
gaggtttgactattccacttacatctttgaggatagtcatatgtttctttttgctagtgaaaatatggagataagtcaagatactctgaaagaccaaag- |
99 |
Q |
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| T |
2882861 |
gaggtttgactattccacttacatctttaaggatagtcatttgtttctttctgcttgtgagaatatggagggaaatcaagatactctgaaagaccaaaga |
2882762 |
T |
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| Q |
100 |
-aaagcatggttatgagactaattgcaaagtaaagaaacaacaaaagctgagaaagtagaatctggttatatttacctcgactgcattcataactgagtt |
198 |
Q |
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| T |
2882761 |
aaaaaaaaagttatgagactaattgc-----gaaacaacaataacaactgagaaagtagaatctggttgtatttacctcgactgtgttagtaaccgagtt |
2882667 |
T |
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| Q |
199 |
caacaaagttggtaaagccctgcctc |
224 |
Q |
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| T |
2882666 |
caacaaagttggcaaagccctgcctc |
2882641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 2872747 - 2872696
Alignment:
| Q |
2 |
aggtttgactattccacttacatctttgaggatagtcatatgtttctttttg |
53 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2872747 |
aggtttgactattccacttacatctttaaggatagtcatatgtttctttttg |
2872696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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