View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_551 (Length: 230)
Name: NF11453A_low_551
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_551 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 113 - 230
Target Start/End: Complemental strand, 37289645 - 37289521
Alignment:
| Q |
113 |
taaagatctgaaacaaaaagggaatgatgaatatggtaaagagacaaagaggagctgaca-----acaaaataaacacatgcagataaaatacacaaaat |
207 |
Q |
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| T |
37289645 |
taaagatctgaaacaaaaagggattaatgaatatggtaaagagacaaagaggagttaacagagacacaaaataaacacatgcagataaaatacacaaaat |
37289546 |
T |
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| Q |
208 |
agagaagatc--taagaatagcaga |
230 |
Q |
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|||||||||| ||||||||||||| |
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| T |
37289545 |
agagaagatcagtaagaatagcaga |
37289521 |
T |
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Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 113 - 228
Target Start/End: Complemental strand, 13927806 - 13927684
Alignment:
| Q |
113 |
taaagatctgaaacaaaaagggaatgatgaatatggtaaagagacaaagaggagctgaca-----acaaaataaacacatgcagataaaatacacaaaat |
207 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||| |
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| T |
13927806 |
taaagatctgaaacaaaaagggattaatgaatatggtaaagagacaaagaggagttaacagagagacaaaataaacacatgcagataaaatacacaaaat |
13927707 |
T |
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| Q |
208 |
agagaagatc--taagaatagca |
228 |
Q |
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|||||||||| ||||||||||| |
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| T |
13927706 |
agagaagatcagtaagaatagca |
13927684 |
T |
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