View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_554 (Length: 230)
Name: NF11453A_low_554
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_554 |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 52386480 - 52386661
Alignment:
| Q |
1 |
atgcaatggttgctataagaatttcttatcttctactaccatttaatatacttatatccaaaatcatctttaattaggtcccttacacattgtcnnnnnn |
100 |
Q |
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| T |
52386480 |
atgcaatggttgctataagaatttcttatcttctaa---catttaatatacttatatccaaaatcatctttaattaggtcccttacaaattgtcaaaaaa |
52386576 |
T |
|
| Q |
101 |
nnnnn-ggtctcttacatggtttacctacagttctattgttcaataattaaaagccggatgaattagtagttaaattcctctctt |
184 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52386577 |
aaaaaaggtcccttacatggtttacctacagttctattgttcaataattaaaagccggatgaattagtagttaaattcctctctt |
52386661 |
T |
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